Genomic Location: not available for this species
NR annotation: CAB3992158.1, DNA repair RAD51 homolog 3, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3992158.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q54PJ7 | DNA repair protein RAD51 homolog 3 OS=Dictyostelium discoideum OX=44689 GN=rad51c PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006197 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08423 all species → | Rad51 | Rad51 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013632 all species → | Domain | DNA recombination and repair protein Rad51-like, C-terminal | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR052093 all species → | Family | Homologous Recombination Repair Mediator | Interproscan |
| IPR020588 all species → | Domain | DNA recombination and repair protein RecA-like, ATP-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46239 all species → | DNA REPAIR PROTEIN RAD51 HOMOLOG 3 RAD51C | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000400 all species → | Molecular Function | four-way junction DNA binding | Interproscan |
| GO:0000707 all species → | Biological Process | meiotic DNA recombinase assembly | Interproscan |
| GO:0005657 all species → | Cellular Component | replication fork | Interproscan |
| GO:0007131 all species → | Biological Process | reciprocal meiotic recombination | Interproscan |
| GO:0008821 all species → | Molecular Function | crossover junction DNA endonuclease activity | Interproscan |
| GO:0033063 all species → | Cellular Component | Rad51B-Rad51C-Rad51D-XRCC2 complex | Interproscan |
| GO:0033065 all species → | Cellular Component | Rad51C-XRCC3 complex | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0140664 all species → | Molecular Function | ATP-dependent DNA damage sensor activity | Interproscan |
CAB3992158.1.Transcript abundance of CAB3992158.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
