Genomic Location: not available for this species
NR annotation: CAB3992315.1, parafibromin isoform X2, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3992315.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5ZLM0 | Parafibromin OS=Gallus gallus OX=9031 GN=CDC73 PE=2 SV=1 |
| Q6P1J9 | Parafibromin OS=Homo sapiens OX=9606 GN=CDC73 PE=1 SV=1 |
| Q8JZM7 | Parafibromin OS=Mus musculus OX=10090 GN=Cdc73 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005327 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16050 all species → | CDC73_N | Paf1 complex subunit CDC73 N-terminal | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007852 all species → | Family | Cdc73/Parafibromin | Interproscan |
| IPR032041 all species → | Domain | Paf1 complex subunit Cdc73, N-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12466 all species → | CDC73 DOMAIN PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000993 all species → | Molecular Function | RNA polymerase II complex binding | Interproscan |
| GO:0006368 all species → | Biological Process | transcription elongation by RNA polymerase II | Interproscan |
| GO:0016593 all species → | Cellular Component | Cdc73/Paf1 complex | Interproscan |
| GO:0032968 all species → | Biological Process | positive regulation of transcription elongation by RNA polymerase II | Interproscan |
| GO:0034402 all species → | Biological Process | obsolete recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex | Interproscan |
CAB3992315.1.Transcript abundance of CAB3992315.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
