Gene detail

Detailed information of CAB3992374.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3992374.1, thiamin pyrophosphokinase 1 isoform X1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3992374.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R0M5	Thiamine pyrophosphokinase 1 OS=Mus musculus OX=10090 GN=Tpk1 PE=1 SV=1
Q9H3S4	Thiamine pyrophosphokinase 1 OS=Homo sapiens OX=9606 GN=TPK1 PE=1 SV=1
Q5E9T4	Thiamine pyrophosphokinase 1 OS=Bos taurus OX=9913 GN=TPK1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006148 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04265 all species →	TPK_B1_binding	Thiamin pyrophosphokinase, vitamin B1 binding domain	Domain	Interproscan
PF04263 all species →	TPK_catalytic	Thiamin pyrophosphokinase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006282 all species →	Family	Thiamin pyrophosphokinase	Interproscan
IPR007373 all species →	Domain	Thiamin pyrophosphokinase, thiamin-binding domain	Interproscan
IPR036759 all species →	Homologous_superfamily	Thiamin pyrophosphokinase, catalytic domain superfamily	Interproscan
IPR016966 all species →	Family	Thiamin pyrophosphokinase, eukaryotic	Interproscan
IPR036371 all species →	Homologous_superfamily	Thiamin pyrophosphokinase, thiamin-binding domain superfamily	Interproscan
IPR007371 all species →	Domain	Thiamin pyrophosphokinase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13622 all species →	THIAMIN PYROPHOSPHOKINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004788 all species →	Molecular Function	thiamine diphosphokinase activity	Interproscan
GO:0006772 all species →	Biological Process	thiamine metabolic process	Interproscan
GO:0009229 all species →	Biological Process	thiamine diphosphate biosynthetic process	Interproscan
GO:0030975 all species →	Molecular Function	thiamine binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00949	thiN, TPK1, THI80; thiamine pyrophosphokinase	EC:2.7.6.2	Thiamine metabolism	ko00730	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3992374.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

9TPM > 0

4Conditions

7.9Max TPM

2.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	4	3.81	7.94
apical branchlet · Temperature treatment at T0	6	3	2.30	6.16
apical branchlet · Temperature treatment at T25	5	1	0.63	3.14
apical branchlet · Control at T0	4	1	0.48	1.91

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	7.94
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	5.31
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	4.96
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	4.66
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	6.16
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	3.98
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	3.66
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	3.14
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	1.91
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.