Gene detail

Detailed information of CAB3993213.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3993213.1, Mitochondrial enolase superfamily member 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3993213.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6INX4	Mitochondrial enolase superfamily member 1 OS=Xenopus laevis OX=8355 GN=enosf1 PE=2 SV=1
Q7L5Y1	Mitochondrial enolase superfamily member 1 OS=Homo sapiens OX=9606 GN=ENOSF1 PE=1 SV=1
Q2KIA9	Mitochondrial enolase superfamily member 1 OS=Bos taurus OX=9913 GN=ENOSF1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004205 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13378 all species →	MR_MLE_C	Enolase C-terminal domain-like	Domain	Interproscan
PF02746 all species →	MR_MLE_N	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018110 all species →	Conserved_site	Mandelate racemase/muconate lactonizing enzyme, conserved site	Interproscan
IPR029065 all species →	Domain	Enolase C-terminal domain-like	Interproscan
IPR029017 all species →	Homologous_superfamily	Enolase-like, N-terminal	Interproscan
IPR013342 all species →	Domain	Mandelate racemase/muconate lactonizing enzyme, C-terminal	Interproscan
IPR013341 all species →	Domain	Mandelate racemase/muconate lactonizing enzyme, N-terminal domain	Interproscan
IPR036849 all species →	Homologous_superfamily	Enolase-like, C-terminal domain superfamily	Interproscan
IPR046945 all species →	Family	L-rhamnonate dehydratase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13794 all species →	ENOLASE SUPERFAMILY, MANDELATE RACEMASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009063 all species →	Biological Process	amino acid catabolic process	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0016052 all species →	Biological Process	carbohydrate catabolic process	Interproscan
GO:0016836 all species →	Molecular Function	hydro-lyase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18334	fucD; L-fuconate dehydratase	EC:4.2.1.68	Fructose and mannose metabolism	ko00051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3993213.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

9TPM > 0

4Conditions

19.2Max TPM

4.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	4	8.23	19.18
apical branchlet · Temperature treatment at T0	6	3	5.08	18.08
apical branchlet · Temperature treatment at T25	5	1	1.48	7.42
apical branchlet · Control at T0	4	1	2.20	8.82

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	19.18
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	13.03
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	8.67
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	8.49
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	18.08
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	6.80
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	5.60
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	7.42
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	8.82
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.