Genomic Location: not available for this species
NR annotation: CAB3993218.1, Ribonucleoside-diphosphate reductase subunit M2, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3993218.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P79733 | Ribonucleoside-diphosphate reductase subunit M2 OS=Danio rerio OX=7955 GN=rrm2 PE=1 SV=1 |
| P31350 | Ribonucleoside-diphosphate reductase subunit M2 OS=Homo sapiens OX=9606 GN=RRM2 PE=1 SV=1 |
| Q4R7Q7 | Ribonucleoside-diphosphate reductase subunit M2 OS=Macaca fascicularis OX=9541 GN=RRM2 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003096 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00268 all species → | Ribonuc_red_sm | Ribonucleotide reductase, small chain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012348 all species → | Homologous_superfamily | Ribonucleotide reductase-like | Interproscan |
| IPR000358 all species → | Family | Ribonucleotide reductase small subunit family | Interproscan |
| IPR009078 all species → | Homologous_superfamily | Ferritin-like superfamily | Interproscan |
| IPR033909 all species → | Family | Ribonucleotide reductase small subunit | Interproscan |
| IPR030475 all species → | Active_site | Ribonucleotide reductase small subunit, acitve site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23409 all species → | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0004748 all species → | Molecular Function | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0009263 all species → | Biological Process | deoxyribonucleotide biosynthetic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10808 | RRM2; ribonucleoside-diphosphate reductase subunit M2 | EC:1.17.4.1 | DNA repair and recombination proteins | ko03400 | deepkoala |
Transcript abundance of CAB3993218.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 218.46 | 606.19 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 150.23 | 626.68 | |
| apical branchlet · Temperature treatment at T25 | 5 | 2 | 36.25 | 178.23 | |
| apical branchlet · Control at T0 | 4 | 1 | 4.04 | 16.14 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
