Genomic Location: not available for this species
NR annotation: CAB3993446.1, high-affinity choline transporter 1-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3993446.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8UWF0 | High-affinity choline transporter 1 OS=Torpedo marmorata OX=7788 GN=CHT1 PE=2 SV=1 |
| Q9GZV3 | High affinity choline transporter 1 OS=Homo sapiens OX=9606 GN=SLC5A7 PE=1 SV=1 |
| O02228 | High-affinity choline transporter 1 OS=Caenorhabditis elegans OX=6239 GN=cho-1 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001039 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00474 all species → | SSF | Sodium:solute symporter family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001734 all species → | Family | Sodium/solute symporter | Interproscan |
| IPR052244 all species → | Family | High-affinity choline transporter | Interproscan |
| IPR038377 all species → | Homologous_superfamily | Sodium/glucose symporter superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45897 all species → | HIGH-AFFINITY CHOLINE TRANSPORTER 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0022857 all species → | Molecular Function | transmembrane transporter activity | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0005307 all species → | Molecular Function | choline:sodium symporter activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0008292 all species → | Biological Process | acetylcholine biosynthetic process | Interproscan |
| GO:0015871 all species → | Biological Process | choline transport | Interproscan |
CAB3993446.1.Transcript abundance of CAB3993446.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
