Gene detail

Detailed information of CAB3993568.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3993568.1, pelota homolog [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3993568.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XIP1	Protein pelota homolog OS=Rattus norvegicus OX=10116 GN=Pelo PE=1 SV=1
Q80X73	Protein pelota homolog OS=Mus musculus OX=10090 GN=Pelo PE=1 SV=3
Q5RCE3	Protein pelota homolog OS=Pongo abelii OX=9601 GN=PELO PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003488 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03465 all species →	eRF1_3	eRF1 domain 3	Domain	Interproscan
PF03464 all species →	eRF1_2	eRF1 domain 2	Domain	Interproscan
PF03463 all species →	eRF1_1	eRF1 domain 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038069 all species →	Homologous_superfamily	Pelota/DOM34, N-terminal domain	Interproscan
IPR029064 all species →	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR005142 all species →	Domain	eRF1 domain 3	Interproscan
IPR042226 all species →	Homologous_superfamily	eRF1, domain 2 superfamily	Interproscan
IPR004405 all species →	Family	Translation release factor pelota	Interproscan
IPR005140 all species →	Domain	eRF1 domain 1/Pelota-like	Interproscan
IPR005141 all species →	Domain	eRF1 domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10853 all species →	PELOTA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0070481 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, non-stop decay	Interproscan
GO:0070966 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, no-go decay	Interproscan
GO:0071025 all species →	Biological Process	RNA surveillance	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0032790 all species →	Biological Process	ribosome disassembly	Interproscan
GO:0070651 all species →	Biological Process	nonfunctional rRNA decay	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06965	PELO, DOM34, pelA; protein pelota	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3993568.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

9TPM > 0

4Conditions

53.1Max TPM

11.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	4	21.55	53.13
apical branchlet · Temperature treatment at T0	6	3	11.67	39.58
apical branchlet · Temperature treatment at T25	5	1	4.55	22.74
apical branchlet · Control at T0	4	1	5.35	21.40

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	53.13
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	32.42
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	22.59
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	21.14
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	39.58
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	22.74
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	7.69
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	22.74
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	21.40
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.