Genomic Location: not available for this species
NR annotation: CAB3993592.1, RNA polymerase II subunit A C-terminal domain phosphatase [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3993592.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9Y5B0 | RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo sapiens OX=9606 GN=CTDP1 PE=1 SV=3 |
| Q7TSG2 | RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus musculus OX=10090 GN=Ctdp1 PE=1 SV=1 |
| Q95QG8 | RNA polymerase II subunit A C-terminal domain phosphatase OS=Caenorhabditis elegans OX=6239 GN=fcp-1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007068 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00533 all species → | BRCT | BRCA1 C Terminus (BRCT) domain | Family | Interproscan |
| PF03031 all species → | NIF | NLI interacting factor-like phosphatase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004274 all species → | Domain | FCP1 homology domain | Interproscan |
| IPR036420 all species → | Homologous_superfamily | BRCT domain superfamily | Interproscan |
| IPR036412 all species → | Homologous_superfamily | HAD-like superfamily | Interproscan |
| IPR001357 all species → | Domain | BRCT domain | Interproscan |
| IPR011947 all species → | Domain | FCP1-like phosphatase, phosphatase domain | Interproscan |
| IPR023214 all species → | Homologous_superfamily | HAD superfamily | Interproscan |
| IPR039189 all species → | Family | CTD phosphatase Fcp1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23081 all species → | RNA POLYMERASE II CTD PHOSPHATASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004721 all species → | Molecular Function | phosphoprotein phosphatase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0008420 all species → | Molecular Function | RNA polymerase II CTD heptapeptide repeat phosphatase activity | Interproscan |
| GO:0070940 all species → | Biological Process | obsolete dephosphorylation of RNA polymerase II C-terminal domain | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15732 | CTDP1, FCP1; RNA polymerase II subunit A C-terminal domain phosphatase | EC:3.1.3.16 | Transcription machinery | ko03021 | deepkoala |
Transcript abundance of CAB3993592.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 8.38 | 34.08 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 5.65 | 17.70 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.87 | 4.36 | |
| apical branchlet · Control at T0 | 4 | 1 | 2.99 | 11.96 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
