Detailed information of CAB3993620.1 in Paramuricea clavata

Genomic Location: pcla8_s002340:11805...12920
NR annotation: CAB3993620.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Pfam domain
No Pfam domain signature was recorded for CAB3993620.1 in Paramuricea clavata.
 InterPro
No InterPro signature was recorded for CAB3993620.1 in Paramuricea clavata.
 PANTHER
PANTHER termDescriptionSource
PTHR37409
all species →		RIKEN CDNA D130052B06 GENEInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for CAB3993620.1 in Paramuricea clavata.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for CAB3993620.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3993620.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples
1TPM > 0
4Conditions
0.2Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
apical branchlet · Control at T25 6 1 0.03 0.19
apical branchlet · Temperature treatment at T0 6 0 0.00 0.00
apical branchlet · Temperature treatment at T25 5 0 0.00 0.00
apical branchlet · Control at T0 4 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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