Genomic Location: not available for this species
NR annotation: CAB3993678.1, ubiquitin carboxyl-terminal hydrolase 14-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3993678.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q0IIF7 | Ubiquitin carboxyl-terminal hydrolase 14 OS=Bos taurus OX=9913 GN=USP14 PE=2 SV=3 |
| Q9JMA1 | Ubiquitin carboxyl-terminal hydrolase 14 OS=Mus musculus OX=10090 GN=Usp14 PE=1 SV=3 |
| P40826 | Ubiquitin carboxyl-terminal hydrolase 14 OS=Oryctolagus cuniculus OX=9986 GN=USP14 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004938 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00443 all species → | UCH | Ubiquitin carboxyl-terminal hydrolase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR044635 all species → | Family | Ubiquitin carboxyl-terminal hydrolase 14-like | Interproscan |
| IPR001394 all species → | Domain | Peptidase C19, ubiquitin carboxyl-terminal hydrolase | Interproscan |
| IPR038765 all species → | Homologous_superfamily | Papain-like cysteine peptidase superfamily | Interproscan |
| IPR018200 all species → | Conserved_site | Ubiquitin specific protease, conserved site | Interproscan |
| IPR028889 all species → | Domain | Ubiquitin specific protease domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43982 all species → | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004843 all species → | Molecular Function | cysteine-type deubiquitinase activity | Interproscan |
| GO:0016579 all species → | Biological Process | protein deubiquitination | Interproscan |
| GO:0043161 all species → | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0061136 all species → | Biological Process | regulation of proteasomal protein catabolic process | Interproscan |
| GO:0070628 all species → | Molecular Function | proteasome binding | Interproscan |
CAB3993678.1.Transcript abundance of CAB3993678.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
