Genomic Location: not available for this species
NR annotation: CAB3993820.1, 60S ribosomal L18 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3993820.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q90YV0 | Large ribosomal subunit protein eL18 OS=Ictalurus punctatus OX=7998 GN=rpl18 PE=2 SV=3 |
| P69090 | Large ribosomal subunit protein eL18 OS=Oreochromis mossambicus OX=8127 GN=rpl18 PE=3 SV=2 |
| P69091 | Large ribosomal subunit protein eL18 OS=Oreochromis niloticus OX=8128 GN=rpl18 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006337 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17135 all species → | Ribosomal_L18 | Ribosomal protein 60S L18 and 50S L18e | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR021131 all species → | Domain | Large ribosomal subunit protein uL15/eL18 | Interproscan |
| IPR000039 all species → | Family | Large ribosomal subunit protein eL18 | Interproscan |
| IPR036227 all species → | Homologous_superfamily | Large ribosomal subunit protein uL15/eL18 superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10934 all species → | 60S RIBOSOMAL PROTEIN L18 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0022625 all species → | Cellular Component | cytosolic large ribosomal subunit | Interproscan |
CAB3993820.1.Transcript abundance of CAB3993820.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
