Gene detail

Detailed information of CAB3994097.1 in Paramuricea clavata

Genomic Location: pcla8_s002436:18441...19853
NR annotation: CAB3994097.1, uridine 5 -monophosphate synthase-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P31754	Uridine 5'-monophosphate synthase OS=Bos taurus OX=9913 GN=UMPS PE=2 SV=1
P13439	Uridine 5'-monophosphate synthase OS=Mus musculus OX=10090 GN=Umps PE=1 SV=3
Q5R514	Uridine 5'-monophosphate synthase OS=Pongo abelii OX=9601 GN=UMPS PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007946 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00215 all species →	OMPdecase	Orotidine 5'-phosphate decarboxylase / HUMPS family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001754 all species →	Domain	Orotidine 5'-phosphate decarboxylase domain	Interproscan
IPR018089 all species →	Active_site	Orotidine 5'-phosphate decarboxylase, active site	Interproscan
IPR004467 all species →	Domain	Orotate phosphoribosyl transferase domain	Interproscan
IPR029057 all species →	Homologous_superfamily	Phosphoribosyltransferase-like	Interproscan
IPR000836 all species →	Domain	Phosphoribosyltransferase domain	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR014732 all species →	Family	Orotidine 5'-phosphate decarboxylase	Interproscan
IPR011060 all species →	Homologous_superfamily	Ribulose-phosphate binding barrel	Interproscan
IPR023031 all species →	Family	Orotate phosphoribosyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19278 all species →	OROTATE PHOSPHORIBOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004590 all species →	Molecular Function	orotidine-5'-phosphate decarboxylase activity	Interproscan
GO:0006207 all species →	Biological Process	'de novo' pyrimidine nucleobase biosynthetic process	Interproscan
GO:0004588 all species →	Molecular Function	orotate phosphoribosyltransferase activity	Interproscan
GO:0006222 all species →	Biological Process	UMP biosynthetic process	Interproscan
GO:0019856 all species →	Biological Process	pyrimidine nucleobase biosynthetic process	Interproscan
GO:0044205 all species →	Biological Process	'de novo' UMP biosynthetic process	Interproscan
GO:0006221 all species →	Biological Process	pyrimidine nucleotide biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13421	UMPS; uridine monophosphate synthetase	EC:2.4.2.10 EC:4.1.1.23	Drug metabolism - other enzymes	ko00983	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3994097.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

12TPM > 0

4Conditions

160.5Max TPM

15.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	4	18.50	55.84
apical branchlet · Temperature treatment at T0	6	4	28.79	160.52
apical branchlet · Temperature treatment at T25	5	3	7.94	34.43
apical branchlet · Control at T0	4	1	0.39	1.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	55.84
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	50.66
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	4.06
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.47
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	160.52
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	10.44
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1.67
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.08
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	34.43
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	4.77
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.50
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	1.57
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.