Gene detail

Detailed information of CAB3994194.1 in Paramuricea clavata

Genomic Location: pcla8_s002460:5698...11668
NR annotation: CAB3994195.1, Zinc finger 271 (Zinc finger 7) (HZF7) (Zinc finger ZNFphex133) (Epstein-Barr virus-induced zinc finger [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-PACLA_8A007597

atgaaatttcaaggaattttcaaggaaataacatatacaatctaaggaatttagagaaattttgatgacaaaaatgagaaattttgattttaaaaatggaagcactgaatgAAAATTGATCATGCTTGAAATGTTTGGTATCGACAAATATTTATTGTCCATTTTGTTCGATAGAAATTTCTCTGGAGAAGGataaatacaaagtcaaaaGGAACATCTTAGATCTAAAGTGAGTGAATTGTTGAAAATGTGCCGTTCATTTGACGTTATATTAAAAGTGGTGTGAGGGTATAAAATATCACCCGGTATGAGTATTGCCCATACTGCACAGTAGGGCAATTGCGAAACCCCAAGATTTGTTACATCACAAATTTTAGCGCCCCCGAAATATATTATGCAACAATTTTCCATGCACTATCCGCCCATCGATATAGGTAACATTCTTGTACTAGGAATCTTAAAAAAGCGTGTATATTTTCCTgcgtatattattaatattaacgcatgccagtggcgtagccaggatttacAAATTGGTGGGGGGNNNNNNNNNNNNNNNNNNNNtgggggggggggggggggggggggatacaaGTTGAGCACCAAAGGCGCGAACACTGTAACGGGCTTCGAAATTCAGAGcctctgaaataccatttcgTGCATTTTGgggtgagattttcaaaaattcagaaGATTATAAACATCATAATTCGGTCAAGAAAGCCTGCGCCTTCTGTTATTAGATTGCAAATAATAAGCTGGACTTGAAATCGGATCAGTGTTCCCCGAAAAGAGAACTTAGAGAAGAGTCCTCTGCCTAGATCTGACACGGTTTTTGTCTCGTACATACAAAAATTGTGATGACAACGAGTGATGTTTACCACATGATATCAAACCGATTTTTGCAGTTTGATATCAAATATTTACTGTACCCAGTTCGCAAACAAATGTATCTTCACCCTATAAAAAAGAAAAGATTGCCTTCTTTTGTCACTGCTTTCACAGTTTTATCTTTGAAATTATCAATTACATAATTTAGAGCACTTGCaaatactgaatattaaaaacCTCGAAATGACCATGCTGTgcaagccgccattttgacaaTATGGCTTCAATGTCATTACAGCATAATTCAGCTCTTGAGTATGCATACTATTTGTTTACCTAAACCAGTTTCAGAACTCGTCCACGATCATGGACTGACGAAGTGTCAGATCTATAGGCAGAGGTCTCTTCTCCTTCACTTCTCTGCCCAAATAGAGACCTCTTTCAGCAGGGAAGTTACCGTACTCGACTGCAACAGTCACCCGGGATTACTATAAGTTTCAATAATAGCCAGGATCTTGCTGTTGCCAAGTACTGTAACTACCCTTGCCTggtaactcgcctccatgtAAACATGCCCTattaaagctggagtaatacaagcaacaaaattgctgcaacttgcaacaaaatctgatttctatgcatgttaattgaaaatgtttacacataaattacaaatcacaaggcaacatgtgtcaacatttctacttaacatgtgttgaaatcagattttgttgcaagttgcagcaattttgttgcattGTCATTTTGTAGTATGGGGATGCAGGGCTGGTGCGCCCCAGGTAGTGGTGTCTGGCACCGCCCCCCCCCAGACAAATCCAGCACCACTGACCACCTTCAAAAATCTGCTTGGCCTGTGTGGCcgtcagggccgccgagaggttggtgggggcccggggcaaattgtTTTTTGGGGGCCCCCTATCCACaaaatttttctggaaaaaaattttttccggacaacaagctcctccccccccccccgtcaccaaaattttttggtcagtgtaccattttacgggtaaaattttttccggactgaaaaatttttccagacgagtacattgcaattgctttccCCAGGGACTTTATCtgatttttttatgccaaatctCGGTACTTAGCctaagaaaacagatatcttgtcctttgcgcggaaatatttaacacacaaaaaagactggggcccaacaaaaaattttcaggggcccccagcacctcggggcccggggcaatttgcccccccccccctctcgacggccgtgttggccgtgttgaTTTCCTGAAACAATTGATTTGtgatactcagaatgctttagttgAATATTatgtttaaatatataaacaagttTCAAGGTTGTTTATGTACAGCCAtcttttcaaatatatatactgcatgtacttgaacaagcaaatttactgaactgtgctacagcaactgtccagtcacgcatatgTGATAAAAAGCCAATATAAACTTATAAACAAAAggtaatgtaaaacgtaacagaatggcgaacatgcagatttgGAACATCTCAAataattgtaaattgtaatgtTGGGTAGCAGGATTGCAGACTACAGATgtgagtgggcagtaaggctccctcatgtaCCACCACAGAGATAAGCCAACAATGGACCCCCCACCCAGTCAGCGTTCAGTTAGGGCAGATGCTATAATGAGTACTTatagatccacactccccccactgTCCAGAGGGGGAGGGAAGCTAAGTTTATTTCAGATAATACTAAGTGTATTATTAGGACATCTGATAGGTGTGTTAATTTCTTCTGTGGAGGTTATAAttgatgttttctggaatgaccaaatattattaaatatgcTAGGTCTGCTTGCTTCTGTATACGGTAATGTTTTTGTCATGATATTGATGTTTGGATGTTTACTCTAAACCTCCGCCATATTGTTTTGTCGTTTGTCCACATTTCGTTTTTGCCATTAAcgaatattattttttcatattcaacGAGTATATTCAATCATGATCTcaaaaatttaggcaatttaTTAGggatacatgaagtattgtcacAGGCATCTGACATACCAAGGGATTTTTGGGAAGAGTGCATCCTAGTATGGTTCCAACTCACTTCCTTAACTTCTTTGCTCTTCTCCAAATTACTCCATTCTTTGAAAGTTCCATCGTTATAAACAGATGAAACGACTTTGTGAAAGTCTATGGTCTGTGCACCTTATACATGGTTCCATATCTTTTTTCCttatatatatttcatcagTCATATTCTTTAACATGGTTTTCAAATTCTGTTTCGACTTGGTTTTGATTACATTCATGCTTTTATCACATGATCACTGTATTTACATTACAAAAGTACCTATGTCTCCCCAGAGGATCGCgtaaagagcctgggaacgaggttcgTGTTTCCGCACACATCCTAACTTCCATCCATTGAacttcttttttatatttttcaggtagttagaTCGCTCAACCAAGGTCACAAATTGCATTAAATCATGTCTGGTCGTCGTGGAAAGACATCGGGCAGCTTAGTAAAACACAAAAGATCACACTCTGCCTCTGGAAATAAGTCCTATGAGtatgatgtttgtaagaagagatttacATACTCAGGCAACTTGATGAAACATAGAACAACACATGCCAGAGataaaccttatgaatgtgatgtttgtcaGAAGAGATTTAGACAGTCTGGGAACTTGGTGAGTCATAGAAGAACGCACACTGgcgagaaaccttatgaatgcgatgtttgtaagaagagatttgGACAGTCAAACAATTTGAAGTATCACAAAAACACACACACTGGatacaaaccttatgaatgcgatgtttgcaaGAAGAGATTTACGCAGTCTGGCAACTTGGTGAACCATAGAAGAACGCACACAGgcgagaaaccttatgaatgtgatgtttgtaaaaaAAGATTTACACACTCATGCAACTTGGTGAACCATAGAAGAACACACACCAGAGACAAACCTTATCAATgcgatgtttgtaagaagagatttacAGAGTCAGGCACCTTGGTCAAGCATAGAAGAACACATACTGgcgagaaaccttatgaatgtgatatttgcaaTGTGAGATTTTCACAGTCAGCGACTTTAACTGCACACAAAAGAACACACACCAGAGACAAACCTTAtcaatgtgatgtttgtaagggGAGATTTTCACATTCAGCCAGCTTTGTGTATCACAAAAAAACACACACTGGACAaaagccttatgaatgtgatgtttgtaagaagagattcATAGGGTCCGGCACCTTGATGAAGCATAAAAGAACGCACACGGGcaacaaaccttatgaatgtgatgtttgtaatgCGAAATTTGCACACTCACGCGACATGGTGCTACATAAACGAAAACACACTGAAAAAAAGCCTTACGAatgtgatatttgcaagaaacGATTTGCACAAAAATCTTCTGTTACTCACCACAAAAAGCAACATTTGTTGTGCAACACTTGCAGCAGAGAGATTGTTCAACCGCAAGATTTGAATGAACATTTTTTCGTGTTTGAACATGATGGAAAATGTAGCTGCAGTAAATGTGATAAACGATTTATTAATTTCATGAAATTGGTACAACATATTGCAAGGCAACATGGCAATGATGGAAACTATCAATGTAGTTTATGTCAAGAACTTGAATCAACACAACCAACTGGTGTTGGATATGTTTGTTGTGTGTGTGATGTTGTGTTTGTTGTTCTCGGAGAACTTGAAGATCACATGGCCACTCATGACACGATGTCGGCTCACGACTAAATTTAATATAATGAGTGTTACTGTTGGTACTCTGGGTGCCAGGGTATACTGTTGGTTGAACTGGGTATAACATATAAACATATAGCGCTATACTTTTCTATTCTTCGCATGCAATTTTTATTTCGTaagtaatatatatagtttgttgCCGATGAGGATTTGTATGTGACTTTCAACAGCAGGCCGGCCTATGGTTTTTCGTAGTTAGAGGCATCCAGCAGGCATCCGTAGTTAGAGgcatcgaggtaggtaaagctttactgttttaacttaccttatattttgttatttgttgtgattttggagccgttgtgctcgcactgattatttatcaactaTGAcgcgtttatatttatatatcgtgaaagcctcaaagccgcgaacgctatcaaaaattgacaaaatactcgatttttatatactcgaactgaaacggagccattgtgctcgcactgattatattgtgtgcaaagcttcaaaactacagcacattttgtaaacaacatgaaatataaatatcaaacacaatttaaattataaatagtaatacaattgaaatcgagattgaaatatacaacgaaatagcaaccattgtgaagtacgcataagattcaacatgacattcgatatagtgaaattaactcatttcaatcactcaaacgtcaagatgataaataataatcattttcaatctattgtagtaattcaccgtttccacgggTTTTTGATACCCATTAAAAAGTGTCAATAAAGCTATATCTAtaggaaataacgttatttagttattaatttgtaaagtaaatctaacagtcaatcgcttttgataaaaccttgacccgcCTTGACAttgttaaaggggccctacagtaattttttagtcaagtaagtattgtttacatttttgttattgtcgctacttgacatgcgcatcacggcatgcatgcgtcttccggtatgcggaagtactcatattcatggatactgcatgtaagatacagccaaacgaatctccgtggagttccctacttaaggtggcttttcgactaaaaaatgactgtagggtcCCTTAATCTCCctttaatgttattattaccgtcgcttgcaactaactattaacggTCGCTTAAAAAAAACAGTGTCTATAttcgcgtgtttctgctggggtctacaccgtaggcaaATTCGCGTGAGagtcttaagttttcttattttgacataatagctattttgcaataaatatattgatattaaatttattgaatcgatattttaagtttcacgccagttgtaccaaag

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002103 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR050752 all species →	Family	C2H2-type zinc-finger domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24384 all species →	FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3994194.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

6TPM > 0

4Conditions

52.3Max TPM

5.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	3	9.22	25.97
apical branchlet · Temperature treatment at T0	6	2	9.25	52.34
apical branchlet · Temperature treatment at T25	5	1	0.35	1.77
apical branchlet · Control at T0	4	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	25.97
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	24.81
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	4.53
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	52.34
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	3.18
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	1.77
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.