Gene detail

Detailed information of CAB3994332.1 in Paramuricea clavata

Genomic Location: pcla8_s002486:38113...41151
NR annotation: CAB3994331.1, Hypothetical predicted protein, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-PACLA_8A024415-2

ATGGCGATGGAAACGTACTTTGATTTCGATGCTGAAACATTTCAAATCATTGAGCGAAAAAGACTGAGTAGCTCATCTGGAGAAGTACCGCCCACCCCTGGCCTTTCAAGCCCTTATATCAAGAGCACATGTTCAGAAGATGCTGGTTTTGAGACCAGCAGTGACCGCAGTTCTCAAGATGGAATACCTCTCTTTGAATCACCACGAAGTCCATGCCTTAAAACTTCATTCAACGGCTTCTCGTGTTCAACCTGCCCAAGAGCCAGTCTTGATTCCTTGGTGTACAGACCTATACGACGTTATGATTCCAAAGAAAGCATCAAATCTACTTCTTCATTTTGGGAGTCAAACTTTCCACCCGAGACCAAAGCAGTGCTCACGAAAATTCGAGATCAGATGCGGTCTAGTTTAGAAAAAGTGAGAAAGCTAGAAGAAGAAGCACAGCAAATTCCTCTTTTACAAGTAAAAATTTCTATTTTACAAGAAGAAAAACGACAACTTATTGCTCAGTTGGAATGTAGACATAATTTAAAGAAACCCCGTTCTCGTGGTAGCAGCATGAATCACAGTCGATCATCTTCAATTGATGACTTGATTTATGGTTTTCAAGATAAAGAAACAAGGACTATTGGTATCGGCGAAGATACTGTTCATGATATACTTTGtgagaaatgtaaagaaattCAGTCCAAGTTGCTAGGACATTCCTGCGATGATAACGTTGGTTTATGTCACGGAGTACCACGTGATACGGAACAACGTCACGGAAGACAAAGAAAAGACATTAAAAACGATGATATTGAAGTGTTTCAAGATCGTTGTACTCAAACAAAAACACCTGAATACAAGCACAACTCTATACAAGTGATAGTATCAACACAAGATAGTTCCACTAGCATGGACACTGGTGACAGTTCAAGCGTAGTGATCAACGATAACCACATAATGACCAAAGAATCCTTTTGCGACCCAATACCTGTCGAAACAAGGTCTGTCGGAGTTGGACAAATGAAATCTTTTCTTAAAGATGCTTGCGTGGGAGAAGATAGAGATATACCTAGTTATGCAGACAATAGTGTTCAAAATGTGGTATCCACGAATGACAAGAGTTGCGGAGTGCACATTTCAACTGAGAATATTGGTGTTAATGTCTGTCCTACTGTAGTTTCTATTGGAACAGGATGTATTTCAAATGGCAGTATAGATAATAGCGAACAACGTTCCATTGGATCTCAAACTGCGGAGAAGCATATAAATTTAGTGACAGTTGGTGTGGGTATGTTCTCGATTGATGACTCTGAAGATCATGAATGTTCAAAGTGTAATTCAGCAAAATCGTTATCCATAGATGGAATACTGGAatctaataaaaatatttacgaAGAAAATACAAGCGTTGCTGTAGGGACGCTGCCTTGGGTTAATTTAGAAAGACAGATACTTCTTGATTACTATGCATCAAGGTCAACAGCTTCTGTTGCCGTGGAAACGGAAACAGACAGCCGTACAGTCGGTTGCGGTGAGCAGAGTGTTACGGAAGTCGCTTGTCAAAACTGTGCCTCTAAATCAACTCGATCCTTAGGTGTAAACTATTCGCCCAAAATGTCTGACAAGGCAGTTGGAGATGTGGTACCTGAGACATATTCAGTAGGAGTGGGTGAATGTTGCTTGACTGATAACTATTGTGAAAGATGTTTCTCATTGGAAACTCGGACTATTGGCGTTGGTAATGGTAGTGTGTTGGATACCGTTCAAACTGAACTCGCAACTACACCAACACTTACAGATGTATCGTTACAGCCACTTACTCCGCCTCAAACTCCGAATTCAAAGAATGAAGCGAAGACTCTCAGTagcaagcctgttgaggaaattTTATCATCAGTTACCAGAATGTTCAGTGATGAGTATGAAAGAGTTGAATGTGAACTCATCACAGATTGCATGGATGGAGAATTGCGTAAAGATCCCAACAGGTATAATTAATCTGTTTGGTTAAAAACACCATGTTCAAACGAATTAAACCTGACATTTCCCGCAAACAACTTCGACAGATTAGGGGCGTAGCCAGCCCCAAACTAGTGCGGGGGAGGGGGTATAATTGTGCGGCTGTCCGGAGACATATGGTCCCCCGGGAAATTGTTGTATTTTTAGGGTGTGCGAAATtatatttcatgcattttagacacgttttatgataatctgaaagccaCAGATTGGGTTtattttatgtcatagatgaAAACGTTAAGAGGTTAACCCCACCCCCTCCCTCAAAATTGGTCCTGAAGAAAAGTTGGGGGTCCAGACCCCTGCCCCATTCCCACCGTAGCTACCGCCTCTGCGACAGATATAGTTATAACAGTGATTTGAAGTATTGAAATGCTGCTGATTTCCGTTGTTGTTGTGCTCATGAATTGTTAATGTTTTGAGAAATATTGTGATGTATATAATTGCTGGATGATATGAACAGAAGAGAAATGCTGGACATTAAGAGATTCTGGTCCTATcatattttctttgaaaacatGCAtcatcagggccgccgagagggggggtggggcaggggggggggggcaaattgccccgaggctctgggggcccctagaaatttaatgttagaaatttaatgggccccagtcattttttcgggcgaaatatttctgttttcgggccaaaatatttgtgttttgggGGCAAtgaaccgaaatttggtatggaaaATTGCGGAAAAGTCCAACGAAAGCAATTATAACGCACCTAAAAAGAATTtattgtccgaaaaatttttttccggaaaattttttttgcaataggggcccctaaaattttttttgctCCGGGCCCCCAccaagctctcggcggccctgtgcATCAGAAAAGTTTCAGTTCCCGAATCGAAATAAGCAGTAAATCGAGAAATAAGGCATTAatcttgtttgcttttattATAGTGGTCGCGAGGATATCTTGCTCACATGCAAACTTCTCCAAAGacattttttaaacaatgaTGAGAATTTGGACGAAGATAAATTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BX02	KN motif and ankyrin repeat domain-containing protein 2 OS=Mus musculus OX=10090 GN=Kank2 PE=1 SV=1
D3ZD05	KN motif and ankyrin repeat domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Kank2 PE=1 SV=2
X1WE18	KN motif and ankyrin repeat domain-containing protein 2 OS=Danio rerio OX=7955 GN=kank2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003574 (this species only)

Pfam domain

No Pfam domain signature was detected for CAB3994332.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR047184 all species →	Family	KN motif and ankyrin repeat domain-containing protein 1-4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24168 all species →	KN MOTIF AND ANKYRIN REPEAT DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0030837 all species →	Biological Process	negative regulation of actin filament polymerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB3994332.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3994332.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

14TPM > 0

4Conditions

23.5Max TPM

3.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	4	0.15	0.36
apical branchlet · Temperature treatment at T0	6	6	6.94	23.52
apical branchlet · Temperature treatment at T25	5	3	4.13	16.60
apical branchlet · Control at T0	4	1	0.25	1.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.36
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.29
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.15
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.09
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	23.52
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	12.65
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	2.53
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1.81
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.65
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.48
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	16.60
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	3.24
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.83
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	1.00
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.