Genomic Location: not available for this species
NR annotation: CAB3994398.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3994398.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0014233 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF15004 all species → | MYEOV2 | Myeloma-overexpressed-like | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029391 all species → | Family | COP9 signalosome complex, subunit 9, metazoa | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR28562 all species → | COP9 SIGNALOSOME COMPLEX SUBUNIT 9 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:2000435 all species → | Biological Process | negative regulation of protein neddylation | Interproscan |
CAB3994398.1.Transcript abundance of CAB3994398.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 33.53 | 79.05 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 14.47 | 45.01 | |
| apical branchlet · Temperature treatment at T25 | 5 | 2 | 11.80 | 39.44 | |
| apical branchlet · Control at T0 | 4 | 2 | 10.17 | 23.30 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
