Genomic Location: not available for this species
NR annotation: CAB3994558.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3994558.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8CGZ2 | Afadin- and alpha-actinin-binding protein OS=Rattus norvegicus OX=10116 GN=Ssx2ip PE=1 SV=1 |
| Q8VC66 | Afadin- and alpha-actinin-binding protein OS=Mus musculus OX=10090 GN=Ssx2ip PE=1 SV=1 |
| Q9Y2D8 | Afadin- and alpha-actinin-binding protein OS=Homo sapiens OX=9606 GN=SSX2IP PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005088 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF11559 all species → | ADIP | Afadin- and alpha -actinin-Binding | Coiled-coil | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR052300 all species → | Family | Adhesion and Centrosome-associated Protein | Interproscan |
| IPR021622 all species → | Family | Afadin/alpha-actinin-binding | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46507 all species → | AFADIN- AND ALPHA-ACTININ-BINDING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0034451 all species → | Cellular Component | centriolar satellite | Interproscan |
| GO:0035735 all species → | Biological Process | intraciliary transport involved in cilium assembly | Interproscan |
| GO:0036064 all species → | Cellular Component | ciliary basal body | Interproscan |
CAB3994558.1.Transcript abundance of CAB3994558.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 8.91 | 20.90 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 2.62 | 8.07 | |
| apical branchlet · Temperature treatment at T25 | 5 | 2 | 2.67 | 13.26 | |
| apical branchlet · Control at T0 | 4 | 1 | 0.65 | 2.62 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
