Genomic Location: not available for this species
NR annotation: CAB3994664.1, Mitochondrial-processing peptidase subunit beta, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3994664.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| O75439 | Mitochondrial-processing peptidase subunit beta OS=Homo sapiens OX=9606 GN=PMPCB PE=1 SV=2 |
| Q5REK3 | Mitochondrial-processing peptidase subunit beta OS=Pongo abelii OX=9601 GN=PMPCB PE=2 SV=1 |
| Q3SZ71 | Mitochondrial-processing peptidase subunit beta OS=Bos taurus OX=9913 GN=PMPCB PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005767 (this species only) |
CAB3994664.1. This gene does have a gene model — the search simply returned no hit.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050361 all species → | Family | Mitochondrial Processing Peptidase/Ubiquinol-cytochrome c Reductase Complex | Interproscan |
| IPR011249 all species → | Homologous_superfamily | Metalloenzyme, LuxS/M16 peptidase-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11851 all species → | METALLOPROTEASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004222 all species → | Molecular Function | metalloendopeptidase activity | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0006627 all species → | Biological Process | protein processing involved in protein targeting to mitochondrion | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
CAB3994664.1.Transcript abundance of CAB3994664.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
