Genomic Location: not available for this species
NR annotation: CAB3994720.1, Glycogen debranching enzyme, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3994720.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q2PQH8 | Glycogen debranching enzyme OS=Canis lupus familiaris OX=9615 GN=AGL PE=2 SV=1 |
| A8BQB4 | Glycogen debranching enzyme OS=Equus caballus OX=9796 GN=AGL PE=2 SV=1 |
| P35574 | Glycogen debranching enzyme OS=Oryctolagus cuniculus OX=9986 GN=AGL PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003738 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF06202 all species → | GDE_C | Amylo-alpha-1,6-glucosidase | Repeat | Interproscan |
| PF14701 all species → | hDGE_amylase | Glycogen debranching enzyme, glucanotransferase domain | Domain | Interproscan |
| PF14702 all species → | hGDE_central | Central domain of human glycogen debranching enzyme | Domain | Interproscan |
| PF14699 all species → | hGDE_N | N-terminal domain from the human glycogen debranching enzyme | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012341 all species → | Homologous_superfamily | Six-hairpin glycosidase-like superfamily | Interproscan |
| IPR017853 all species → | Homologous_superfamily | Glycoside hydrolase superfamily | Interproscan |
| IPR008928 all species → | Homologous_superfamily | Six-hairpin glycosidase superfamily | Interproscan |
| IPR032790 all species → | Domain | Glycogen debranching enzyme, C-terminal | Interproscan |
| IPR032792 all species → | Domain | Glycogen debranching enzyme, glucanotransferase domain | Interproscan |
| IPR032788 all species → | Domain | Glycogen debranching enzyme, central domain | Interproscan |
| IPR006421 all species → | Family | Glycogen debranching enzyme, metazoa | Interproscan |
| IPR029436 all species → | Domain | Eukaryotic glycogen debranching enzyme, N-terminal domain | Interproscan |
| IPR010401 all species → | Family | Glycogen debranching enzyme | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10569 all species → | GLYCOGEN DEBRANCHING ENZYME | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
| GO:0004134 all species → | Molecular Function | 4-alpha-glucanotransferase activity | Interproscan |
| GO:0004135 all species → | Molecular Function | amylo-alpha-1,6-glucosidase activity | Interproscan |
| GO:0005978 all species → | Biological Process | glycogen biosynthetic process | Interproscan |
| GO:0005980 all species → | Biological Process | glycogen catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01196 | AGL; glycogen debranching enzyme | EC:2.4.1.25 EC:3.2.1.33 | Starch and sucrose metabolism | ko00500 | deepkoala |
Transcript abundance of CAB3994720.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 14.03 | 22.52 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 5.87 | 18.43 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 5.96 | 13.28 | |
| apical branchlet · Control at T0 | 4 | 3 | 4.97 | 9.22 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
