Genomic Location: not available for this species
NR annotation: CAB3994902.1, forkhead box G1-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3994902.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q90964 | Forkhead box protein G1 OS=Gallus gallus OX=9031 GN=FOXG1 PE=2 SV=1 |
| Q9YHC5 | Forkhead box protein G1 OS=Xenopus laevis OX=8355 GN=foxg1 PE=2 SV=1 |
| Q1A1A4 | Forkhead box protein G1 OS=Pipistrellus rusticus OX=372076 GN=FOXG1 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010271 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00250 all species → | Forkhead | Forkhead domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR047208 all species → | Family | Forkhead box protein G1 | Interproscan |
| IPR018122 all species → | Conserved_site | Fork head domain conserved site1 | Interproscan |
| IPR001766 all species → | Domain | Fork head domain | Interproscan |
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR030456 all species → | Conserved_site | Fork head domain conserved site 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46617 all species → | FORKHEAD BOX PROTEIN G1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0043565 all species → | Molecular Function | sequence-specific DNA binding | Interproscan |
| GO:1990837 all species → | Molecular Function | sequence-specific double-stranded DNA binding | Interproscan |
| GO:0003700 all species → | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K09385 | FOXG; forkhead box protein G | - | Transcription factors | ko03000 | deepkoala |
Transcript abundance of CAB3994902.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 7.47 | 19.20 | |
| apical branchlet · Temperature treatment at T0 | 6 | 2 | 0.73 | 3.81 | |
| apical branchlet · Temperature treatment at T25 | 5 | 2 | 3.35 | 16.37 | |
| apical branchlet · Control at T0 | 4 | 1 | 0.00 | 0.01 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
