Genomic Location: not available for this species
NR annotation: CAB3995142.1, WD repeat-containing 35-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3995143.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A6N6J5 | WD repeat-containing protein 35 OS=Rattus norvegicus OX=10116 GN=Wdr35 PE=1 SV=1 |
| Q8BND3 | WD repeat-containing protein 35 OS=Mus musculus OX=10090 GN=Wdr35 PE=1 SV=3 |
| Q9P2L0 | WD repeat-containing protein 35 OS=Homo sapiens OX=9606 GN=WDR35 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002339 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12894 all species → | ANAPC4_WD40 | Anaphase-promoting complex subunit 4 WD40 domain | Repeat | Interproscan |
| PF00637 all species → | Clathrin | Region in Clathrin and VPS | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR024977 all species → | Domain | Anaphase-promoting complex subunit 4-like, WD40 domain | Interproscan |
| IPR039857 all species → | Family | Intraflagellar transport protein 122/121 homolog | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR000547 all species → | Repeat | Clathrin, heavy chain/VPS, 7-fold repeat | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR017233 all species → | Family | WD repeat protein 35 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12764 all species → | WD REPEAT DOMAIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0030991 all species → | Cellular Component | intraciliary transport particle A | Interproscan |
| GO:0035721 all species → | Biological Process | intraciliary retrograde transport | Interproscan |
| GO:0060271 all species → | Biological Process | cilium assembly | Interproscan |
| GO:0061512 all species → | Biological Process | protein localization to cilium | Interproscan |
| GO:0097730 all species → | Cellular Component | non-motile cilium | Interproscan |
| GO:1905515 all species → | Biological Process | non-motile cilium assembly | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0016192 all species → | Biological Process | vesicle-mediated transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K19674 | WDR35, IFT121; WD repeat-containing protein 35 | - | Cilium and associated proteins | ko03037 | deepkoala |
Transcript abundance of CAB3995143.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 10.54 | 22.70 | |
| apical branchlet · Temperature treatment at T0 | 6 | 6 | 11.91 | 30.52 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 2.93 | 6.89 | |
| apical branchlet · Control at T0 | 4 | 2 | 2.42 | 7.38 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
