Genomic Location: not available for this species
NR annotation: CAB3995156.1, signal recognition particle receptor subunit alpha-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3995156.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9U5L1 | Signal recognition particle receptor subunit alpha homolog OS=Drosophila melanogaster OX=7227 GN=SrpRalpha PE=1 SV=2 |
| Q9DBG7 | Signal recognition particle receptor subunit alpha OS=Mus musculus OX=10090 GN=Srpra PE=1 SV=1 |
| P08240 | Signal recognition particle receptor subunit alpha OS=Homo sapiens OX=9606 GN=SRPRA PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006629 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02881 all species → | SRP54_N | SRP54-type protein, helical bundle domain | Domain | Interproscan |
| PF04086 all species → | SRP-alpha_N | Signal recognition particle, alpha subunit, N-terminal | Family | Interproscan |
| PF00448 all species → | SRP54 | SRP54-type protein, GTPase domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036225 all species → | Homologous_superfamily | SRP/SRP receptor, N-terminal | Interproscan |
| IPR013822 all species → | Domain | Signal recognition particle SRP54, helical bundle | Interproscan |
| IPR042101 all species → | Homologous_superfamily | Signal recognition particle SRP54, N-terminal domain superfamily | Interproscan |
| IPR007222 all species → | Domain | Signal recognition particle receptor, alpha subunit, N-terminal | Interproscan |
| IPR000897 all species → | Domain | Signal recognition particle, SRP54 subunit, GTPase domain | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR011012 all species → | Homologous_superfamily | Longin-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43134 all species → | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005525 all species → | Molecular Function | GTP binding | Interproscan |
| GO:0006614 all species → | Biological Process | SRP-dependent cotranslational protein targeting to membrane | Interproscan |
| GO:0003924 all species → | Molecular Function | GTPase activity | Interproscan |
| GO:0005047 all species → | Molecular Function | signal recognition particle binding | Interproscan |
| GO:0005785 all species → | Cellular Component | signal recognition particle receptor complex | Interproscan |
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0005789 all species → | Cellular Component | endoplasmic reticulum membrane | Interproscan |
| GO:0006605 all species → | Biological Process | protein targeting | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0045047 all species → | Biological Process | protein targeting to ER | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13431 | SRPR; signal recognition particle receptor subunit alpha | - | Secretion system | ko02044 | deepkoala |
Transcript abundance of CAB3995156.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
