Genomic Location: not available for this species
NR annotation: CAB3995629.1, ribosome biogenesis NSA2 homolog [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3995629.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q3SX11 | Ribosome biogenesis protein NSA2 homolog OS=Bos taurus OX=9913 GN=NSA2 PE=2 SV=1 |
| O95478 | Ribosome biogenesis protein NSA2 homolog OS=Homo sapiens OX=9606 GN=NSA2 PE=1 SV=1 |
| Q9CR47 | Ribosome biogenesis protein NSA2 homolog OS=Mus musculus OX=10090 GN=Nsa2 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007938 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01201 all species → | Ribosomal_S8e | Ribosomal protein S8e | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR039411 all species → | Family | Ribosomal biogenesis NSA2 family | Interproscan |
| IPR022309 all species → | Family | Ribosomal protein eS8/ribosomal biogenesis NSA2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12642 all species → | RIBOSOME BIOGENESIS PROTEIN NSA2 HOMOLOG | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000460 all species → | Biological Process | maturation of 5.8S rRNA | Interproscan |
| GO:0000470 all species → | Biological Process | maturation of LSU-rRNA | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0030687 all species → | Cellular Component | preribosome, large subunit precursor | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14842 | NSA2; ribosome biogenesis protein NSA2 | - | Ribosome biogenesis | ko03009 | deepkoala |
Transcript abundance of CAB3995629.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
