Genomic Location: not available for this species
NR annotation: CAB3995630.1, ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3995630.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5U2U0 | ATP-dependent clpX-like chaperone, mitochondrial OS=Rattus norvegicus OX=10116 GN=Clpx PE=2 SV=1 |
| Q9JHS4 | ATP-dependent clpX-like chaperone, mitochondrial OS=Mus musculus OX=10090 GN=Clpx PE=1 SV=2 |
| O76031 | ATP-dependent clpX-like chaperone, mitochondrial OS=Homo sapiens OX=9606 GN=CLPX PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004148 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10431 all species → | ClpB_D2-small | C-terminal, D2-small domain, of ClpB protein | Domain | Interproscan |
| PF07724 all species → | AAA_2 | AAA domain (Cdc48 subfamily) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR050052 all species → | Family | ATP-dependent Clp protease ATP-binding subunit ClpX | Interproscan |
| IPR019489 all species → | Domain | Clp ATPase, C-terminal | Interproscan |
| IPR004487 all species → | Family | Clp protease, ATP-binding subunit ClpX | Interproscan |
| IPR010603 all species → | Domain | Zinc finger, ClpX C4-type | Interproscan |
| IPR003959 all species → | Domain | ATPase, AAA-type, core | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR48102 all species → | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0005759 all species → | Cellular Component | mitochondrial matrix | Interproscan |
| GO:0051603 all species → | Biological Process | proteolysis involved in protein catabolic process | Interproscan |
| GO:0006457 all species → | Biological Process | protein folding | Interproscan |
| GO:0051082 all species → | Molecular Function | unfolded protein binding | Interproscan |
| GO:0140662 all species → | Molecular Function | ATP-dependent protein folding chaperone | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0046983 all species → | Molecular Function | protein dimerization activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03544 | clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX | - | Chaperones and folding catalysts | ko03110 | deepkoala |
Transcript abundance of CAB3995630.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 6 | 5.90 | 15.66 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 2.10 | 6.26 | |
| apical branchlet · Temperature treatment at T25 | 5 | 4 | 6.66 | 19.13 | |
| apical branchlet · Control at T0 | 4 | 3 | 6.79 | 15.24 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
