Genomic Location: not available for this species
NR annotation: CAB3995649.1, E3 ubiquitin- ligase CHFR [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3995649.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A5WW08 | E3 ubiquitin-protein ligase CHFR OS=Danio rerio OX=7955 GN=chfr PE=2 SV=1 |
| Q5RF77 | E3 ubiquitin-protein ligase CHFR OS=Pongo abelii OX=9601 GN=CHFR PE=2 SV=1 |
| Q96EP1 | E3 ubiquitin-protein ligase CHFR OS=Homo sapiens OX=9606 GN=CHFR PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004999 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17979 all species → | zf-CRD | Cysteine rich domain with multizinc binding regions | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR052256 all species → | Family | E3 ubiquitin-protein ligase CHFR | Interproscan |
| IPR040909 all species → | Domain | E3 ubiquitin-protein ligase CHFR, cysteine rich domain with multizinc binding | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR16079 all species → | UBIQUITIN LIGASE PROTEIN CHFR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004842 all species → | Molecular Function | ubiquitin-protein transferase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006511 all species → | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0007093 all species → | Biological Process | mitotic cell cycle checkpoint signaling | Interproscan |
| GO:0016567 all species → | Biological Process | protein ubiquitination | Interproscan |
CAB3995649.1.Transcript abundance of CAB3995649.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
