Genomic Location: not available for this species
NR annotation: CAB3995680.1, hypothetical protein BSL78_18317 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3995680.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q6NUJ1 | Proactivator polypeptide-like 1 OS=Homo sapiens OX=9606 GN=PSAPL1 PE=1 SV=2 |
| P20097 | Saposin-C OS=Cavia porcellus OX=10141 GN=PSAP PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002805 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05184 all species → | SapB_1 | Saposin-like type B, region 1 | Domain | Interproscan |
| PF02199 all species → | SapA | Saposin A-type domain | Family | Interproscan |
| PF03489 all species → | SapB_2 | Saposin-like type B, region 2 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003119 all species → | Domain | Saposin A-type domain | Interproscan |
| IPR008139 all species → | Domain | Saposin B type domain | Interproscan |
| IPR011001 all species → | Homologous_superfamily | Saposin-like | Interproscan |
| IPR007856 all species → | Domain | Saposin-like type B, region 1 | Interproscan |
| IPR008373 all species → | Family | Saposin | Interproscan |
| IPR051428 all species → | Family | Sphingolipid Activators and Surfactant Proteins | Interproscan |
| IPR008138 all species → | Domain | Saposin B type, region 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11480 all species → | SAPOSIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006629 all species → | Biological Process | lipid metabolic process | Interproscan |
| GO:0005764 all species → | Cellular Component | lysosome | Interproscan |
| GO:0006665 all species → | Biological Process | sphingolipid metabolic process | Interproscan |
CAB3995680.1.Transcript abundance of CAB3995680.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
