Genomic Location: not available for this species
NR annotation: CAB3995919.1, cyclin A [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3995919.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P24861 | G2/mitotic-specific cyclin-A OS=Patella vulgata OX=6465 PE=2 SV=1 |
| P04962 | G2/mitotic-specific cyclin-A OS=Spisula solidissima OX=6584 PE=2 SV=1 |
| P43449 | Cyclin-A2 OS=Gallus gallus OX=9031 GN=CCNA2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001031 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02984 all species → | Cyclin_C | Cyclin, C-terminal domain | Domain | Interproscan |
| PF00134 all species → | Cyclin_N | Cyclin, N-terminal domain | Domain | Interproscan |
| PF16500 all species → | Cyclin_N2 | Cyclin-A N-terminal APC/C binding region | Disordered | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004367 all species → | Domain | Cyclin, C-terminal domain | Interproscan |
| IPR046965 all species → | Family | Cyclin A/B-like | Interproscan |
| IPR039361 all species → | Family | Cyclin | Interproscan |
| IPR048258 all species → | Conserved_site | Cyclins, cyclin-box | Interproscan |
| IPR013763 all species → | Domain | Cyclin-like domain | Interproscan |
| IPR006671 all species → | Domain | Cyclin, N-terminal | Interproscan |
| IPR036915 all species → | Homologous_superfamily | Cyclin-like superfamily | Interproscan |
| IPR032447 all species → | Domain | Cyclin-A, N-terminal APC/C binding region | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10177 all species → | CYCLINS | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016538 all species → | Molecular Function | cyclin-dependent protein serine/threonine kinase regulator activity | Interproscan |
| GO:0044772 all species → | Biological Process | mitotic cell cycle phase transition | Interproscan |
| GO:0000079 all species → | Biological Process | regulation of cyclin-dependent protein serine/threonine kinase activity | Interproscan |
| GO:0000307 all species → | Cellular Component | cyclin-dependent protein kinase holoenzyme complex | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K06627 | CCNA; cyclin-A | - | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB3995919.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 399.02 | 1,207.38 | |
| apical branchlet · Temperature treatment at T0 | 6 | 6 | 472.99 | 1,328.66 | |
| apical branchlet · Temperature treatment at T25 | 5 | 2 | 200.70 | 1,003.41 | |
| apical branchlet · Control at T0 | 4 | 1 | 0.55 | 2.22 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
