Genomic Location: not available for this species
NR annotation: CAB3996474.1, THO complex subunit 3 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3996474.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8VE80 | THO complex subunit 3 OS=Mus musculus OX=10090 GN=Thoc3 PE=2 SV=1 |
| Q29RH4 | THO complex subunit 3 OS=Bos taurus OX=9913 GN=THOC3 PE=2 SV=1 |
| Q96J01 | THO complex subunit 3 OS=Homo sapiens OX=9606 GN=THOC3 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007377 (this species only) |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00400 all species → | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| PF07676 all species → | PD40 | WD40-like Beta Propeller Repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019775 all species → | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR011659 all species → | Repeat | WD40-like beta propeller | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR040132 all species → | Family | TREX component Tex1/THOC3 | Interproscan |
| IPR020472 all species → | Repeat | G-protein beta WD-40 repeat | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22839 all species → | THO COMPLEX SUBUNIT 3 THO3 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0000445 all species → | Cellular Component | THO complex part of transcription export complex | Interproscan |
| GO:0006406 all species → | Biological Process | mRNA export from nucleus | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12880 | THOC3; THO complex subunit 3 | - | Spliceosome | ko03041 | deepkoala |
Transcript abundance of CAB3996474.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 12.58 | 36.62 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 9.21 | 24.48 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 5.99 | 21.10 | |
| apical branchlet · Control at T0 | 4 | 2 | 2.92 | 7.11 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
