Gene detail

Detailed information of CAB3996483.1 in Paramuricea clavata

Genomic Location: pcla8_s002934:13688...16810
NR annotation: CAB3996483.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

PACLA_8A034037

ATGTGCTTTTTACTAGGAATCTCTGATTTCGCGTACTTTCAAAAGGCTGGTGGAACGGGGTGCTCGAGTAATTTAACCGAGAACAACACAGTGACGGACTTTACCTACACGCCTGAACAAGAACGCTCCTTCTTGCTAGAGCTGTTCCATGCAACTGGTGGTCGTCGGTTCTGGATAATTAAAACAGGATGGGGGGAGGAGAGCAACATTACTCATTGCAAATGGTTTGGTATAGAATGCTACAAGAACAGTACTTATCTAAAATTTATTGATCTTACCGAAAACGGGTTAGATGGCCAACCGCCAAATTTTTGGAGATTTCGGAATTTACAAGGGATATGTTTGTCTCGTAATAAACATATGACTGGGAAAATATCTGATGTAGTATCAAGTAATATGACCCGGCTTCGACGCCTATGCGTCTCATTTTCAGGAATGTATGGTTCTGTGCCATGGAGTCTTATACTACAGCTTTACAATCTTGAAAAGTTACAGATATGTTGTATGCATACTGGACTAAACGGCAGCCTACCACAAGATATTGGAAGATTAAGCAAACTTCAAGTTTTTAGTATTGGTGAAAACGGCATCAAAGATATTCATTTACCATTGAGCATCGGAAAACTAACAAAATTGTGGTTTTTGGACTTAGAATATGTGATTTTTAGGTCAGGAGACCTGTGGTATTTCAATAATATGACTCAACTGCAGTACTTACATCTGACAAATTGCGGGATAAAAGGAACGCTGCCTAAAGACTTTGGACACACCCATCCCAATATCATTGAGGTACGTCTATATGGAAATAATCTAAAAGGCGAACTACATTCGTGTTTTCTCGGTTTCAAAAAGATTGCTCAGCTTTCCGTTGGATCGAATCTGTACCTGCACGGCTTCCTCCCGAGTACATTAAGCAAACTCGAAACGCTCCAAGTACTCGACTTATCCAGGAATAATTTCACAGGTTTTGCGAAAAATATGACTTTCAACAAACAGCTACAAACACTGTATATTGATGGAAATGTCAACCTCAAAGTTGAAGGTAACCGTCTTTTACAAGCATTACAGCCTTGCAAGGATCAACTGCGCATGCTAGTCGCACGAAACTGTGGACTGAAGGGAGATCTGTCGAAGACCCTTTGGACCTTTGACAATATTATGTACATAGACCTCAGTCAAAACAATCTGACTGGACACATCCCGAAAAATGATGGTCAGTTCAGTATGGCTTATCTATTCTATCTCAGTTTAGCATCGAATGATTTAAAAGGCGATCTATCTAAGGGTTTTCTCGCGCCTTTAAAGGCACTGACATACTTGGATCTTCGGAGAAACCGGTATATGAAAACCAAGGCCCCTTTGCTAAATGAGTACTTGAATGCCACATTTACGGAGACCTTTCATAAAGATACATTTACTTGCCCGATGTTACGATTAACAAGCTCAGGCGGGAGAGCTGATGTAGACCCGGATTATTATGGATATAGACTGTGCTTTTGTAACAGAGGGTACTATGGATTTATGAAATACTGCAAGCCCTGTATGAAAGGCGCTTCCTGCGACGTGGAAGCATCACCCACGCAGTCATTTAAGGAAGTAATTGAAGTTAAGATGACGATTGACAAGGGATATTGGCCGTGTTGCGGAAATTTAACTAACGTTACTCGTATGATTAAATGCAATTACCAAGAGGAAAAATTTGATGATGAAATTTGCAGTTCGTCTGGAAAATGCAAGTGCAAGTTAAACCAACTCAACGGTCAACTACAAACCTCGTGTGATGCGTCATGTATATGTCGCTATGGCAACAAAGGACGATTTTGTTCTCAGTGCAAGGACGGTTATTACAAGAAAGGCTCGTTGTGCATTTCGTGTCCCAAATTCCGTAAAAACTTTCCGGTTGTATTAACTGTTTGCTTTGTGTTGTGTTTGGTTGGCTCTATTGCATTGTTGGTTTGTTTGAGATACCGCAAAAAGCTTGTTCTCATTCTAATATTTGCTTTAGCAGTAACTCTGATAGTCTTGCGCTACAAAAGCATAATCCCAGGGTGGTTTTTTGTCATAATATTTACAGTTTGGATTTTAGGTCTTTCTGGTGCTAGGGAGAACTTAAAGAGCTTCCTGTCAATTGCATTGTTCTTTTTCCAATCTCTTGATGCCATGTTTTCAGACGCCAACATTTGGCCCCGAACAATACTGCTGCTAAAATACCAAATCACAAATGCGTTTAATTTTGCAATCCCTGAACTCACTTGTAGTTTTTCCGATGCAAATCGTCCTGAAGTTAGCTTCGCCGTAATTTTGTTACTTCCCGCCACAGGTATATTTCTTATATGGCTGTTGCATGGCTTGTCTAAAATCACTAGTTGTTGCCGGCAAAATTCAGTCATTCCAAGTTCTTCATGCAAGCGATTAAGTATTCAAATACTCTTATTTGTGTACTTTCCTATTACTGCCAAAACTTTTCAGGCAGTGTTACCTTGCGAACATCGTGACGGTTTGTCGTATTTAAAAGTCACGCCGTGGTTAGACTGTAATGGTACCTCTTACAACTGGCTGGTAGCTTTAGGATGTGTTTCATTGGTGGTATTTGTTATCGGTGTGCCTTTTTTTGTATTTGTTCCATTGCTCTATAAATATGTAGACCATCATGGCAAGGCTGTTTCTGAAGAGGCGAATATTTGGTTGAAACCTCTATACAAAGAATTTAGGACGCCATACCGTCGCTATTTTCCGTTAGTGTTTCTCGGCCGTCGACTCTTACTTGCCGTGTTTCTTACCGTCGTTCCGACTACCTCATCTTACCAGGTTATAGGCATAACCCTGCTTCTGGTTATCTTTATAGCTATAACCTTAATTTTCAGACCGTTCGAACAGTACTCGGAAAGATTCGAGTTTGAAACTTTGGCTGATGTGATCGTTTCTGTTGTTCTGTTGTTGTCGTTCGTCGGCTTGGCGTTGTTACGAGTTTCTCCGAAATTTGATAACTCCCTGGTGTTGTTGATCATTTCTATGAATTGTGTTGTGGTATTATGTTGCGTTGTAGGTATGCTCGTGTTGTTTGCTGTCAATCTATGGAAGTTTCCGGGCAACGTCCAGCAATACGAGCTAATTCCAGATTAA

Transcript

rna-PACLA_8A034037

ATGTGCTTTTTACTAGGAATCTCTGATTTCGCGTACTTTCAAAAGGCTGGTGGAACGGGGTGCTCGAGTAATTTAACCGAGAACAACACAGTGACGGACTTTACCTACACGCCTGAACAAGAACGCTCCTTCTTGCTAGAGCTGTTCCATGCAACTGGTGGTCGTCGGTTCTGGATAATTAAAACAGGATGGGGGGAGGAGAGCAACATTACTCATTGCAAATGGTTTGGTATAGAATGCTACAAGAACAGTACTTATCTAAAATTTATTGATCTTACCGAAAACGGGTTAGATGGCCAACCGCCAAATTTTTGGAGATTTCGGAATTTACAAGGGATATGTTTGTCTCGTAATAAACATATGACTGGGAAAATATCTGATGTAGTATCAAGTAATATGACCCGGCTTCGACGCCTATGCGTCTCATTTTCAGGAATGTATGGTTCTGTGCCATGGAGTCTTATACTACAGCTTTACAATCTTGAAAAGTTACAGATATGTTGTATGCATACTGGACTAAACGGCAGCCTACCACAAGATATTGGAAGATTAAGCAAACTTCAAGTTTTTAGTATTGGTGAAAACGGCATCAAAGATATTCATTTACCATTGAGCATCGGAAAACTAACAAAATTGTGGTTTTTGGACTTAGAATATGTGATTTTTAGGTCAGGAGACCTGTGGTATTTCAATAATATGACTCAACTGCAGTACTTACATCTGACAAATTGCGGGATAAAAGGAACGCTGCCTAAAGACTTTGGACACACCCATCCCAATATCATTGAGGTACGTCTATATGGAAATAATCTAAAAGGCGAACTACATTCGTGTTTTCTCGGTTTCAAAAAGATTGCTCAGCTTTCCGTTGGATCGAATCTGTACCTGCACGGCTTCCTCCCGAGTACATTAAGCAAACTCGAAACGCTCCAAGTACTCGACTTATCCAGGAATAATTTCACAGGTTTTGCGAAAAATATGACTTTCAACAAACAGCTACAAACACTGTATATTGATGGAAATGTCAACCTCAAAGTTGAAGGTAACCGTCTTTTACAAGCATTACAGCCTTGCAAGGATCAACTGCGCATGCTAGTCGCACGAAACTGTGGACTGAAGGGAGATCTGTCGAAGACCCTTTGGACCTTTGACAATATTATGTACATAGACCTCAGTCAAAACAATCTGACTGGACACATCCCGAAAAATGATGGTCAGTTCAGTATGGCTTATCTATTCTATCTCAGTTTAGCATCGAATGATTTAAAAGGCGATCTATCTAAGGGTTTTCTCGCGCCTTTAAAGGCACTGACATACTTGGATCTTCGGAGAAACCGGTATATGAAAACCAAGGCCCCTTTGCTAAATGAGTACTTGAATGCCACATTTACGGAGACCTTTCATAAAGATACATTTACTTGCCCGATGTTACGATTAACAAGCTCAGGCGGGAGAGCTGATGTAGACCCGGATTATTATGGATATAGACTGTGCTTTTGTAACAGAGGGTACTATGGATTTATGAAATACTGCAAGCCCTGTATGAAAGGCGCTTCCTGCGACGTGGAAGCATCACCCACGCAGTCATTTAAGGAAGTAATTGAAGTTAAGATGACGATTGACAAGGGATATTGGCCGTGTTGCGGAAATTTAACTAACGTTACTCGTATGATTAAATGCAATTACCAAGAGGAAAAATTTGatgatgaaatttgcagttCGTCTGGAAAATGCAAGTGCAAGTTAAACCAACTCAACGGTCAACTACAAACCTCGTGTGATGCGTCATGTATATGTCGCTATGGCAACAAAGGACGATTTTGTTCTCAGTGCAAGGACGGTTATTACAAGAAAGGCTCGTTGTGCATTTCGTGTCCCAAATTCCGTAAAAACTTTCCGGTTGTATTAACTGTTTGCTTTGTGTTGTGTTTGGTTGGCTCTATTGCATTGTTGGTTTGTTTGAGATACCGCAAAAAGCTTGTTCTCATTCTAATATTTGCTTTAGCAGTAACTCTGATAGTCTTGCGCTACAAAAGCATAATCCCAGGGTGGTTTTTTGTCATAATATTTACAGTTTGGATTTTAGGTCTTTCTGGTGCTAGGGAGAACTTAAAGAGCTTCCTGTCAATTGCATTGTTCTTTTTCCAATCTCTTGATGCCATGTTTTCAGACGCCAACATTTGGCCCCGAACAATACTGCTGCTAAAATACCAAATCACAAATGCGTTTAATTTTGCAATCCCTGAACTCACTTGTAGTTTTTCCGATGCAAATCGTCCTGAAGTTAGCTTCGCCGTAATTTTGTTACTTCCCGCCACAGGTATATTTCTTATATGGCTGTTGCATGGCTTGTCTAAAATCACTAGTTGTTGCCGGCAAAATTCAGTCATTCCAAGTTCTTCATGCAAGCGATTAAGTATTCAAATACTCTTATTTGTGTACTTTCCTATTACTGCCAAAACTTTTCAGGCAGTGTTACCTTGCGAACATCGTGACGGTTTGTCGTATTTAAAAGTCACGCCGTGGTTAGACTGTAATGGTACCTCTTACAACTGGCTGGTAGCTTTAGGATGTGTTTCATTGGTGGTATTTGTTATCGGTGTGCCTTTTTTTGTATTTGTTCCATTGCTCTATAAATATGTAGACCATCATGGCAAGGCTGTTTCTGAAGAGGCGAATATTTGGTTGAAACCTCTATACAAAGAATTTAGGACGCCATACCGTCGCTATTTTCCGTTAGTGTTTCTCGGCCGTCGACTCTTACTTGCCGTGTTTCTTACCGTCGTTCCGACTACCTCATCTTACCAGGTTATAGGCATAACCCTGCTTCTGGTTATCTTTATAGCTATAACCTTAATTTTCAGACCGTTCGAACAGTACTCGGAAAGATTCGAGTTTGAAACTTTGGCTGATGTGATCGTTTCTGTTGTTCTGTTGTTGTCGTTCGTCGGCTTGGCGTTGTTACGAGTTTCTCCGAAATTTGATAACTCCCTGGTGTTGTTGATCATTTCTATGAATTGTGTTGTGGTATTATGTTGCGTTGTAGGTATGCTCGTGTTGTTTGCTGTCAATCTATGGAAGTTTCCGGGCAACGTCCAGCAATACGAGCTAATTCCAGATTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000817 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00560 all species →	LRR_1	Leucine Rich Repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR053211 all species →	Family	DNA damage-repair/toleration-associated protein	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48060 all species →	DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04613	V2R; vomeronasal 2 receptor	-	G protein-coupled receptors	ko04030	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3996483.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

8TPM > 0

4Conditions

0.5Max TPM

0.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	4	0.15	0.51
apical branchlet · Temperature treatment at T0	6	2	0.04	0.23
apical branchlet · Temperature treatment at T25	5	1	0.02	0.09
apical branchlet · Control at T0	4	1	0.03	0.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.51
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.14
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.13
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.11
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.23
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.04
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.09
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.11
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.