Genomic Location: not available for this species
NR annotation: CAB3996506.1, pygopus homolog 1-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3996506.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9D0P5 | Pygopus homolog 1 OS=Mus musculus OX=10090 GN=Pygo1 PE=1 SV=1 |
| Q9Y3Y4 | Pygopus homolog 1 OS=Homo sapiens OX=9606 GN=PYGO1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005408 (this species only) |
| Ubiquitin family | E3|E3 activity RING|PHD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00628 all species → | PHD | PHD-finger | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019787 all species → | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR011011 all species → | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR019786 all species → | Conserved_site | Zinc finger, PHD-type, conserved site | Interproscan |
| IPR001965 all species → | Domain | Zinc finger, PHD-type | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR052475 all species → | Family | Wnt Signal Transduction Protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23194 all species → | PYGOPUS | Interproscan |
CAB3996506.1. This gene does have a gene model — the search simply returned no hit.CAB3996506.1.Transcript abundance of CAB3996506.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 62.73 | 192.77 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 21.88 | 112.67 | |
| apical branchlet · Temperature treatment at T25 | 5 | 2 | 14.22 | 65.35 | |
| apical branchlet · Control at T0 | 4 | 1 | 4.78 | 19.14 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
