Gene detail

Detailed information of CAB3996575.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3996575.1, Chondroitin sulfate ABC exolyase, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3996575.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000631 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09092 all species →	Lyase_N	Lyase, N terminal	Domain	Interproscan
PF09093 all species →	Lyase_catalyt	Lyase, catalytic	Repeat	Interproscan
PF02278 all species →	Lyase_8	Polysaccharide lyase family 8, super-sandwich domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014718 all species →	Homologous_superfamily	Glycoside hydrolase-type carbohydrate-binding	Interproscan
IPR008929 all species →	Homologous_superfamily	Chondroitin AC/alginate lyase	Interproscan
IPR015176 all species →	Domain	Lyase, N-terminal	Interproscan
IPR015177 all species →	Domain	Lyase, catalytic	Interproscan
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR039174 all species →	Family	Chondroitin sulfate ABC lyase	Interproscan
IPR003159 all species →	Domain	Polysaccharide lyase family 8, central domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37322 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006027 all species →	Biological Process	glycosaminoglycan catabolic process	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0016829 all species →	Molecular Function	lyase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB3996575.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.