Genomic Location: not available for this species
NR annotation: CAB3996602.1, myb transcription factor [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3996603.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q54NA6 | Myb-like protein L OS=Dictyostelium discoideum OX=44689 GN=mybL PE=3 SV=1 |
| Q5SXM2 | snRNA-activating protein complex subunit 4 OS=Homo sapiens OX=9606 GN=SNAPC4 PE=1 SV=1 |
| Q8BP86 | snRNA-activating protein complex subunit 4 OS=Mus musculus OX=10090 GN=Snapc4 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001328 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00249 all species → | Myb_DNA-binding | Myb-like DNA-binding domain | Domain | Interproscan |
| PF13921 all species → | Myb_DNA-bind_6 | Myb-like DNA-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001005 all species → | Domain | SANT/Myb domain | Interproscan |
| IPR017930 all species → | Domain | Myb domain | Interproscan |
| IPR009057 all species → | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR051575 all species → | Family | Myb-like DNA-binding | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46621 all species → | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000978 all species → | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0001006 all species → | Molecular Function | RNA polymerase III type 3 promoter sequence-specific DNA binding | Interproscan |
| GO:0019185 all species → | Cellular Component | snRNA-activating protein complex | Interproscan |
| GO:0042795 all species → | Biological Process | snRNA transcription by RNA polymerase II | Interproscan |
| GO:0042796 all species → | Biological Process | snRNA transcription by RNA polymerase III | Interproscan |
CAB3996603.1.Transcript abundance of CAB3996603.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
