Genomic Location: not available for this species
NR annotation: CAB3996786.1, sequestosome-1 isoform X2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3996786.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| O08623 | Sequestosome-1 OS=Rattus norvegicus OX=10116 GN=Sqstm1 PE=1 SV=1 |
| Q64337 | Sequestosome-1 OS=Mus musculus OX=10090 GN=Sqstm1 PE=1 SV=1 |
| Q13501 | Sequestosome-1 OS=Homo sapiens OX=9606 GN=SQSTM1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003508 (this species only) |
| Ubiquitin family | ULD|UFD|PB1 · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00569 all species → | ZZ | Zinc finger, ZZ type | Domain | Interproscan |
| PF16577 all species → | UBA_5 | UBA domain | Domain | Interproscan |
| PF00564 all species → | PB1 | PB1 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR033741 all species → | Domain | Sequestosome-1, UBA domain | Interproscan |
| IPR009060 all species → | Homologous_superfamily | UBA-like superfamily | Interproscan |
| IPR000433 all species → | Domain | Zinc finger, ZZ-type | Interproscan |
| IPR052260 all species → | Family | Autophagy Receptor and Signaling Regulator | Interproscan |
| IPR034866 all species → | Domain | Sequestosome-1, PB1 domain | Interproscan |
| IPR043145 all species → | Homologous_superfamily | Zinc finger, ZZ-type superfamily | Interproscan |
| IPR000270 all species → | Domain | PB1 domain | Interproscan |
| IPR015940 all species → | Domain | Ubiquitin-associated domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15090 all species → | SEQUESTOSOME 1-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0000423 all species → | Biological Process | mitophagy | Interproscan |
| GO:0005080 all species → | Molecular Function | protein kinase C binding | Interproscan |
| GO:0007032 all species → | Biological Process | endosome organization | Interproscan |
| GO:0016235 all species → | Cellular Component | aggresome | Interproscan |
| GO:0035973 all species → | Biological Process | aggrephagy | Interproscan |
| GO:0044753 all species → | Cellular Component | amphisome | Interproscan |
| GO:0070530 all species → | Molecular Function | K63-linked polyubiquitin modification-dependent protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14381 | SQSTM1; sequestosome 1 | - | Exosome | ko04147 | deepkoala |
Transcript abundance of CAB3996786.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 104.55 | 236.59 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 60.92 | 164.12 | |
| apical branchlet · Temperature treatment at T25 | 5 | 4 | 130.19 | 363.46 | |
| apical branchlet · Control at T0 | 4 | 2 | 45.53 | 158.41 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
