Genomic Location: not available for this species
NR annotation: CAB3997008.1, rRNA methyltransferase 2, mitochondrial-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3997008.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q0BT08 | Ribosomal RNA large subunit methyltransferase E OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) OX=391165 GN=rlmE PE=3 SV=1 |
| Q2W0P2 | Ribosomal RNA large subunit methyltransferase E OS=Paramagnetospirillum magneticum (strain ATCC 700264 / AMB-1) OX=342108 GN=rlmE PE=3 SV=1 |
| B6JHM9 | Ribosomal RNA large subunit methyltransferase E OS=Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) OX=504832 GN=rlmE PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007548 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01728 all species → | FtsJ | FtsJ-like methyltransferase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002877 all species → | Domain | Ribosomal RNA methyltransferase, FtsJ domain | Interproscan |
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR050082 all species → | Family | Ribosomal RNA large subunit methyltransferase RlmE | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10920 all species → | RIBOSOMAL RNA METHYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008168 all species → | Molecular Function | methyltransferase activity | Interproscan |
| GO:0032259 all species → | Biological Process | methylation | Interproscan |
| GO:0001510 all species → | Biological Process | RNA methylation | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0008173 all species → | Molecular Function | RNA methyltransferase activity | Interproscan |
| GO:0008650 all species → | Molecular Function | rRNA (uridine-2'-O-)-methyltransferase activity | Interproscan |
CAB3997008.1.Transcript abundance of CAB3997008.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
