Gene detail

Detailed information of CAB3997150.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3997150.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3997150.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZIS0	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Gallus gallus OX=9031 GN=SDHD PE=1 SV=1
Q5RC29	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Pongo abelii OX=9601 GN=SDHD PE=2 SV=1
Q95123	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Bos taurus OX=9913 GN=SDHD PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008909 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05328 all species →	CybS	CybS, succinate dehydrogenase cytochrome B small subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007992 all species →	Family	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, CybS	Interproscan
IPR034804 all species →	Homologous_superfamily	Fumarate reductase/succinate dehydrogenase, transmembrane subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13337 all species →	SUCCINATE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005740 all species →	Cellular Component	mitochondrial envelope	Interproscan
GO:0005749 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006121 all species →	Biological Process	mitochondrial electron transport, succinate to ubiquinone	Interproscan
GO:0008177 all species →	Molecular Function	succinate dehydrogenase (quinone) activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0048039 all species →	Molecular Function	ubiquinone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB3997150.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3997150.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

12TPM > 0

4Conditions

97.8Max TPM

30.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	5	50.63	90.62
apical branchlet · Temperature treatment at T0	6	4	33.04	97.78
apical branchlet · Temperature treatment at T25	5	2	19.83	79.65
apical branchlet · Control at T0	4	1	11.99	47.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	90.62
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	76.74
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	55.11
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	50.21
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	31.10
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	97.78
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	58.59
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	28.86
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	12.97
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	79.65
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	19.51
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	47.96
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.