Genomic Location: not available for this species
NR annotation: CAB3997151.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3997151.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5ZIS0 | Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Gallus gallus OX=9031 GN=SDHD PE=1 SV=1 |
| Q5RC29 | Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Pongo abelii OX=9601 GN=SDHD PE=2 SV=1 |
| Q95123 | Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Bos taurus OX=9913 GN=SDHD PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008909 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05328 all species → | CybS | CybS, succinate dehydrogenase cytochrome B small subunit | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR034804 all species → | Homologous_superfamily | Fumarate reductase/succinate dehydrogenase, transmembrane subunit | Interproscan |
| IPR007992 all species → | Family | Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, CybS | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13337 all species → | SUCCINATE DEHYDROGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005740 all species → | Cellular Component | mitochondrial envelope | Interproscan |
| GO:0005749 all species → | Cellular Component | obsolete mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) | Interproscan |
| GO:0006099 all species → | Biological Process | tricarboxylic acid cycle | Interproscan |
| GO:0006121 all species → | Biological Process | mitochondrial electron transport, succinate to ubiquinone | Interproscan |
| GO:0008177 all species → | Molecular Function | succinate dehydrogenase (quinone) activity | Interproscan |
| GO:0020037 all species → | Molecular Function | heme binding | Interproscan |
| GO:0048039 all species → | Molecular Function | ubiquinone binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00237 | SDHD, SDH4; succinate dehydrogenase (ubiquinone) membrane anchor subunit | - | Non-alcoholic fatty liver disease | ko04932 | deepkoala |
Transcript abundance of CAB3997151.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
