Genomic Location: not available for this species
NR annotation: CAB3997407.1, nuclear factor 1 A-type isoform X3 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3997407.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q02780 | Nuclear factor 1 A-type OS=Mus musculus OX=10090 GN=Nfia PE=1 SV=1 |
| Q12857 | Nuclear factor 1 A-type OS=Homo sapiens OX=9606 GN=NFIA PE=1 SV=2 |
| P09414 | Nuclear factor 1 A-type OS=Rattus norvegicus OX=10116 GN=Nfia PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002791 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03165 all species → | MH1 | MH1 domain | Domain | Interproscan |
| PF10524 all species → | NfI_DNAbd_pre-N | Nuclear factor I protein pre-N-terminus | Family | Interproscan |
| PF00859 all species → | CTF_NFI | CTF/NF-I family transcription modulation region | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003619 all species → | Domain | MAD homology 1, Dwarfin-type | Interproscan |
| IPR000647 all species → | Family | CTF transcription factor/nuclear factor 1 | Interproscan |
| IPR019548 all species → | Domain | CTF transcription factor/nuclear factor 1, N-terminal | Interproscan |
| IPR020604 all species → | Domain | CTF transcription factor/nuclear factor 1, DNA-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11492 all species → | NUCLEAR FACTOR I | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0000978 all species → | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 all species → | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0003700 all species → | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
CAB3997407.1.Transcript abundance of CAB3997407.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
