Gene detail

Detailed information of CAB3997408.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB3997408.1, nuclear factor 1 A-type isoform X2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB3997408.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q12857	Nuclear factor 1 A-type OS=Homo sapiens OX=9606 GN=NFIA PE=1 SV=2
P09414	Nuclear factor 1 A-type OS=Rattus norvegicus OX=10116 GN=Nfia PE=1 SV=2
P17923	Nuclear factor 1 A-type OS=Gallus gallus OX=9031 GN=NFIA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002791 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03165 all species →	MH1	MH1 domain	Domain	Interproscan
PF00859 all species →	CTF_NFI	CTF/NF-I family transcription modulation region	Family	Interproscan
PF10524 all species →	NfI_DNAbd_pre-N	Nuclear factor I protein pre-N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003619 all species →	Domain	MAD homology 1, Dwarfin-type	Interproscan
IPR000647 all species →	Family	CTF transcription factor/nuclear factor 1	Interproscan
IPR020604 all species →	Domain	CTF transcription factor/nuclear factor 1, DNA-binding domain	Interproscan
IPR019548 all species →	Domain	CTF transcription factor/nuclear factor 1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11492 all species →	NUCLEAR FACTOR I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09172	NFIN; nuclear factor I, invertebrate	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.