Genomic Location: not available for this species
NR annotation: CAB3998062.1, pseudouridine-metabolizing bifunctional -like isoform X1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3998063.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A7GCK7 | Pseudouridine-5'-phosphate glycosidase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) OX=441772 GN=psuG PE=3 SV=1 |
| Q8RCT3 | Pseudouridine-5'-phosphate glycosidase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=psuG PE=3 SV=1 |
| Q84K35 | Pseudouridine-5'-phosphate glycosidase OS=Arabidopsis thaliana OX=3702 GN=PUMY PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004160 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04227 all species → | Indigoidine_A | Indigoidine synthase A like protein | Family | Interproscan |
| PF00294 all species → | PfkB | pfkB family carbohydrate kinase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR022830 all species → | Homologous_superfamily | Indigoidine synthase A-like | Interproscan |
| IPR007342 all species → | Family | Pseudouridine-5'-phosphate glycosidase | Interproscan |
| IPR029056 all species → | Homologous_superfamily | Ribokinase-like | Interproscan |
| IPR011611 all species → | Domain | Carbohydrate kinase PfkB | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42909 all species → | ZGC:136858 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004730 all species → | Molecular Function | pseudouridylate synthase activity | Interproscan |
CAB3998063.1.Transcript abundance of CAB3998063.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
