Genomic Location: not available for this species
NR annotation: CAB3998314.1, SEC13 homolog [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3998314.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P55735 | Protein SEC13 homolog OS=Homo sapiens OX=9606 GN=SEC13 PE=1 SV=3 |
| Q3ZCC9 | Protein SEC13 homolog OS=Bos taurus OX=9913 GN=SEC13 PE=2 SV=1 |
| Q9D1M0 | Protein SEC13 homolog OS=Mus musculus OX=10090 GN=Sec13 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004398 (this species only) |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00400 all species → | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037363 all species → | Family | Sec13/Seh1 family | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11024 all species → | NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005198 all species → | Molecular Function | structural molecule activity | Interproscan |
| GO:0006606 all species → | Biological Process | protein import into nucleus | Interproscan |
| GO:0030127 all species → | Cellular Component | COPII vesicle coat | Interproscan |
| GO:0031080 all species → | Cellular Component | nuclear pore outer ring | Interproscan |
| GO:0032008 all species → | Biological Process | positive regulation of TOR signaling | Interproscan |
| GO:0032527 all species → | Biological Process | protein exit from endoplasmic reticulum | Interproscan |
| GO:0090114 all species → | Biological Process | COPII-coated vesicle budding | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14004 | SEC13; protein transport protein SEC13 | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of CAB3998314.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 12.39 | 47.99 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 5.92 | 29.23 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.54 | 2.70 | |
| apical branchlet · Control at T0 | 4 | 1 | 1.10 | 4.41 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
