Detailed information of CAB3998562.1 in Paramuricea clavata

Genomic Location: pcla8_s003449:34983...36503
NR annotation: CAB3998562.1, zinc finger MYM-type 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007732 (this species only)

 Pfam domain
No Pfam domain signature was detected for CAB3998562.1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR012337
all species →		Homologous_superfamilyRibonuclease H-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11697
all species →		GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for CAB3998562.1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for CAB3998562.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB3998562.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples
8TPM > 0
4Conditions
0.2Max TPM
0.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
apical branchlet · Control at T25 6 4 0.11 0.22
apical branchlet · Temperature treatment at T0 6 2 0.04 0.18
apical branchlet · Temperature treatment at T25 5 1 0.02 0.11
apical branchlet · Control at T0 4 1 0.03 0.14

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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