Genomic Location: not available for this species
NR annotation: CAB3998801.1, mesoderm induction early response 1-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3998801.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q7T105 | Mesoderm induction early response protein 1 OS=Xenopus laevis OX=8355 GN=mier1 PE=2 SV=1 |
| Q5ZKT9 | Mesoderm induction early response protein 1 OS=Gallus gallus OX=9031 GN=MIER1 PE=2 SV=1 |
| Q5UAK0 | Mesoderm induction early response protein 1 OS=Mus musculus OX=10090 GN=Mier1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006663 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01448 all species → | ELM2 | ELM2 domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009057 all species → | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR017884 all species → | Domain | SANT domain | Interproscan |
| IPR000949 all species → | Domain | ELM2 domain | Interproscan |
| IPR040138 all species → | Family | Mesoderm induction early response protein/metastasis-associated protein | Interproscan |
| IPR001005 all species → | Domain | SANT/Myb domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10865 all species → | METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000122 all species → | Biological Process | negative regulation of transcription by RNA polymerase II | Interproscan |
| GO:0003714 all species → | Molecular Function | transcription corepressor activity | Interproscan |
| GO:0005654 all species → | Cellular Component | nucleoplasm | Interproscan |
| GO:0016575 all species → | Biological Process | obsolete histone deacetylation | Interproscan |
| GO:0042826 all species → | Molecular Function | histone deacetylase binding | Interproscan |
CAB3998801.1.Transcript abundance of CAB3998801.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
