Genomic Location: not available for this species
NR annotation: CAB3998809.1, RING finger 37 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3998809.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| O94941 | RING finger protein 37 OS=Homo sapiens OX=9606 GN=UBOX5 PE=1 SV=1 |
| Q925F4 | RING finger protein 37 OS=Mus musculus OX=10090 GN=Ubox5 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008641 (this species only) |
| Ubiquitin family | E3|E3 activity RING|U-box · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04564 all species → | U-box | U-box domain | Domain | Interproscan |
| PF19318 all species → | DUF5918 | Family of unknown function (DUF5918) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR039925 all species → | Domain | RNF37, RING-Ubox | Interproscan |
| IPR017907 all species → | Conserved_site | Zinc finger, RING-type, conserved site | Interproscan |
| IPR039847 all species → | Family | RING finger protein 37 | Interproscan |
| IPR003613 all species → | Domain | U-box domain | Interproscan |
| IPR045696 all species → | Domain | RING finger protein 37, N-terminal | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13492 all species → | RING FINGER PROTEIN 37 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000209 all species → | Biological Process | protein polyubiquitination | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0031625 all species → | Molecular Function | ubiquitin protein ligase binding | Interproscan |
| GO:0034450 all species → | Molecular Function | ubiquitin-ubiquitin ligase activity | Interproscan |
| GO:0004842 all species → | Molecular Function | ubiquitin-protein transferase activity | Interproscan |
| GO:0016567 all species → | Biological Process | protein ubiquitination | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10600 | UBOX5, UIP5; U-box domain-containing protein 5 | - | Ubiquitin system | ko04121 | deepkoala |
Transcript abundance of CAB3998809.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 17.31 | 72.96 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 17.29 | 78.33 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.76 | 3.81 | |
| apical branchlet · Control at T0 | 4 | 1 | 1.00 | 4.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
