Genomic Location: not available for this species
NR annotation: CAB3998978.1, malonyl- decarboxylase, mitochondrial-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3998978.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P12617 | Malonyl-CoA decarboxylase, mitochondrial OS=Anser anser anser OX=8844 GN=MLYCD PE=1 SV=2 |
| O95822 | Malonyl-CoA decarboxylase, mitochondrial OS=Homo sapiens OX=9606 GN=MLYCD PE=1 SV=3 |
| Q920F5 | Malonyl-CoA decarboxylase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mlycd PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003729 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00092 all species → | VWA | von Willebrand factor type A domain | Domain | Interproscan |
| PF05292 all species → | MCD | Malonyl-CoA decarboxylase C-terminal domain | Domain | Interproscan |
| PF17408 all species → | MCD_N | Malonyl-CoA decarboxylase N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR038351 all species → | Homologous_superfamily | Malonyl-CoA decarboxylase, N-terminal domain superfamily | Interproscan |
| IPR002035 all species → | Domain | von Willebrand factor, type A | Interproscan |
| IPR036465 all species → | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| IPR007956 all species → | Domain | Malonyl-CoA decarboxylase, C-terminal | Interproscan |
| IPR042303 all species → | Homologous_superfamily | Malonyl-CoA decarboxylase, C-terminal catalytic domain superfamily | Interproscan |
| IPR038917 all species → | Family | Malonyl-CoA decarboxylase | Interproscan |
| IPR035372 all species → | Domain | Malonyl-CoA decarboxylase, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR28641 all species → | - | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006633 all species → | Biological Process | fatty acid biosynthetic process | Interproscan |
| GO:0050080 all species → | Molecular Function | malonyl-CoA decarboxylase activity | Interproscan |
| GO:0005759 all species → | Cellular Component | mitochondrial matrix | Interproscan |
| GO:0005782 all species → | Cellular Component | peroxisomal matrix | Interproscan |
| GO:0006085 all species → | Biological Process | acetyl-CoA biosynthetic process | Interproscan |
| GO:2001294 all species → | Biological Process | malonyl-CoA catabolic process | Interproscan |
CAB3998978.1.Transcript abundance of CAB3998978.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
