Genomic Location: not available for this species
NR annotation: CAB3999003.1, zinc finger MIZ domain-containing 1 isoform X6 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3999003.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9ULJ6 | Zinc finger MIZ domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ZMIZ1 PE=1 SV=3 |
| Q6P1E1 | Zinc finger MIZ domain-containing protein 1 OS=Mus musculus OX=10090 GN=Zmiz1 PE=1 SV=1 |
| Q8NF64 | Zinc finger MIZ domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZMIZ2 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001604 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF18028 all species → | Zmiz1_N | Zmiz1 N-terminal tetratricopeptide repeat domain | Repeat | Interproscan |
| PF02891 all species → | zf-MIZ | MIZ/SP-RING zinc finger | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR040797 all species → | Domain | Zmiz1, N-terminal tetratricopeptide repeat domain | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR004181 all species → | Domain | Zinc finger, MIZ-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10782 all species → | ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000790 all species → | Cellular Component | chromatin | Interproscan |
| GO:0003712 all species → | Molecular Function | transcription coregulator activity | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0016925 all species → | Biological Process | protein sumoylation | Interproscan |
| GO:0030374 all species → | Molecular Function | nuclear receptor coactivator activity | Interproscan |
| GO:0061665 all species → | Molecular Function | SUMO ligase activity | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K22403 | ZMIZ; zinc finger MIZ domain-containing protein | - | Transcription | - | deepkoala |
Transcript abundance of CAB3999003.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
