Genomic Location: not available for this species
NR annotation: CAB3999166.1, Tyrosine aminotransferase [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3999166.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8QZR1 | Tyrosine aminotransferase OS=Mus musculus OX=10090 GN=Tat PE=1 SV=1 |
| P04694 | Tyrosine aminotransferase OS=Rattus norvegicus OX=10116 GN=Tat PE=1 SV=1 |
| P17735 | Tyrosine aminotransferase OS=Homo sapiens OX=9606 GN=TAT PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002933 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00155 all species → | Aminotran_1_2 | Aminotransferase class I and II | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015421 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, major domain | Interproscan |
| IPR004838 all species → | Binding_site | Aminotransferases, class-I, pyridoxal-phosphate-binding site | Interproscan |
| IPR015424 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase | Interproscan |
| IPR004839 all species → | Domain | Aminotransferase, class I/classII | Interproscan |
| IPR005958 all species → | Family | Tyrosine/nicotianamine aminotransferase | Interproscan |
| IPR015422 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, small domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45744 all species → | TYROSINE AMINOTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0009058 all species → | Biological Process | biosynthetic process | Interproscan |
| GO:0030170 all species → | Molecular Function | pyridoxal phosphate binding | Interproscan |
| GO:0006520 all species → | Biological Process | amino acid metabolic process | Interproscan |
| GO:0008483 all species → | Molecular Function | transaminase activity | Interproscan |
| GO:0004838 all species → | Molecular Function | L-tyrosine-2-oxoglutarate transaminase activity | Interproscan |
| GO:0006559 all species → | Biological Process | L-phenylalanine catabolic process | Interproscan |
| GO:0006572 all species → | Biological Process | tyrosine catabolic process | Interproscan |
CAB3999166.1.Transcript abundance of CAB3999166.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
