Genomic Location: not available for this species
NR annotation: CAB3999175.1, Nucleolar 6 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3999175.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5M7P5 | Nucleolar protein 6 OS=Xenopus tropicalis OX=8364 GN=nol6 PE=2 SV=1 |
| Q6NRY2 | Nucleolar protein 6 OS=Xenopus laevis OX=8355 GN=nol6 PE=2 SV=2 |
| Q9H6R4 | Nucleolar protein 6 OS=Homo sapiens OX=9606 GN=NOL6 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003567 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17403 all species → | Nrap_D2 | Nrap protein PAP/OAS-like domain | Domain | Interproscan |
| PF03813 all species → | Nrap | Nrap protein domain 1 | Domain | Interproscan |
| PF17405 all species → | Nrap_D4 | Nrap protein nucleotidyltransferase domain 4 | Domain | Interproscan |
| PF17404 all species → | Nrap_D3 | Nrap protein domain 3 | Domain | Interproscan |
| PF17407 all species → | Nrap_D6 | Nrap protein domain 6 | Domain | Interproscan |
| PF17406 all species → | Nrap_D5 | Nrap protein PAP/OAS1-like domain 5 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR035367 all species → | Domain | Nrap protein, domain 2 | Interproscan |
| IPR035082 all species → | Domain | Nrap protein domain 1 | Interproscan |
| IPR035369 all species → | Domain | Nrap protein, domain 4 | Interproscan |
| IPR035368 all species → | Domain | Nrap protein, domain 3 | Interproscan |
| IPR035371 all species → | Domain | Nrap protein, domain 6 | Interproscan |
| IPR035370 all species → | Domain | Nrap protein, domain 5 | Interproscan |
| IPR005554 all species → | Family | NOL6/Upt22 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR17972 all species → | NUCLEOLAR RNA-ASSOCIATED PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006364 all species → | Biological Process | rRNA processing | Interproscan |
| GO:0006409 all species → | Biological Process | tRNA export from nucleus | Interproscan |
| GO:0032040 all species → | Cellular Component | small-subunit processome | Interproscan |
| GO:0032545 all species → | Cellular Component | CURI complex | Interproscan |
| GO:0034456 all species → | Cellular Component | UTP-C complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14544 | UTP22, NOL6; U3 small nucleolar RNA-associated protein 22 | - | Ribosome biogenesis | ko03009 | deepkoala |
Transcript abundance of CAB3999175.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
