Genomic Location: not available for this species
NR annotation: CAB3999274.1, Phthiocerol synthesis polyketide synthase type I [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3999274.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q7TXL8 | Phenolphthiocerol/phthiocerol polyketide synthase subunit C OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=ppsC PE=1 SV=1 |
| P96202 | Phenolphthiocerol/phthiocerol polyketide synthase subunit C OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=ppsC PE=1 SV=2 |
| A0A172QE52 | Highly-reducing polyketide synthase 1 OS=Aureobasidium melanogenum OX=46634 GN=PKS1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000656 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14765 all species → | PS-DH | Polyketide synthase dehydratase N-terminal domain | Domain | Interproscan |
| PF02801 all species → | Ketoacyl-synt_C | Beta-ketoacyl synthase, C-terminal domain | Domain | Interproscan |
| PF08659 all species → | KR | KR domain | Family | Interproscan |
| PF00975 all species → | Thioesterase | Thioesterase domain | Domain | Interproscan |
| PF02460 all species → | Patched | Patched family | Family | Interproscan |
| PF00109 all species → | ketoacyl-synt | Beta-ketoacyl synthase, N-terminal domain | Domain | Interproscan |
| PF21089 all species → | PKS_DH_N | Polyketide synthase dehydratase domain | Domain | Interproscan |
| PF00698 all species → | Acyl_transf_1 | Acyl transferase domain | Domain | Interproscan |
| PF16197 all species → | KAsynt_C_assoc | Ketoacyl-synthetase C-terminal extension | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR020841 all species → | Domain | Polyketide synthase, beta-ketoacyl synthase domain | Interproscan |
| IPR050091 all species → | Family | Polyketide and Nonribosomal Peptide Biosynthesis Enzymes | Interproscan |
| IPR049551 all species → | Domain | Polyketide synthase, dehydratase domain, C-terminal | Interproscan |
| IPR016036 all species → | Homologous_superfamily | Malonyl-CoA ACP transacylase, ACP-binding | Interproscan |
| IPR016039 all species → | Homologous_superfamily | Thiolase-like | Interproscan |
| IPR014031 all species → | Domain | Beta-ketoacyl synthase, C-terminal | Interproscan |
| IPR001227 all species → | Homologous_superfamily | Acyl transferase domain superfamily | Interproscan |
| IPR013968 all species → | Domain | Polyketide synthase, ketoreductase domain | Interproscan |
| IPR001031 all species → | Domain | Thioesterase | Interproscan |
| IPR016035 all species → | Homologous_superfamily | Acyl transferase/acyl hydrolase/lysophospholipase | Interproscan |
| IPR003392 all species → | Family | Protein patched/dispatched | Interproscan |
| IPR014030 all species → | Domain | Beta-ketoacyl synthase, N-terminal | Interproscan |
| IPR036291 all species → | Homologous_superfamily | NAD(P)-binding domain superfamily | Interproscan |
| IPR014043 all species → | Domain | Acyl transferase | Interproscan |
| IPR049552 all species → | Domain | Polyketide synthase, dehydratase domain, N-terminal | Interproscan |
| IPR042104 all species → | Homologous_superfamily | Polyketide synthase, dehydratase domain superfamily | Interproscan |
| IPR029058 all species → | Homologous_superfamily | Alpha/Beta hydrolase fold | Interproscan |
| IPR018201 all species → | Active_site | Beta-ketoacyl synthase, active site | Interproscan |
| IPR000731 all species → | Domain | Sterol-sensing domain | Interproscan |
| IPR049900 all species → | Domain | Polyketide/metazoan fatty acid synthase, dehydratase domain | Interproscan |
| IPR032821 all species → | Domain | Polyketide synthase, C-terminal extension | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43775 all species → | FATTY ACID SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004312 all species → | Molecular Function | fatty acid synthase activity | Interproscan |
| GO:0006633 all species → | Biological Process | fatty acid biosynthetic process | Interproscan |
| GO:0016746 all species → | Molecular Function | acyltransferase activity | Interproscan |
| GO:0016740 all species → | Molecular Function | transferase activity | Interproscan |
| GO:0009058 all species → | Biological Process | biosynthetic process | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0004315 all species → | Molecular Function | 3-oxoacyl-[acyl-carrier-protein] synthase activity | Interproscan |
CAB3999274.1.Transcript abundance of CAB3999274.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
