Genomic Location: not available for this species
NR annotation: CAB3999277.1, F-box WD repeat-containing 4 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3999277.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P57775 | F-box/WD repeat-containing protein 4 OS=Homo sapiens OX=9606 GN=FBXW4 PE=1 SV=1 |
| Q9JMJ2 | F-box/WD repeat-containing protein 4 OS=Mus musculus OX=10090 GN=Fbxw4 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007475 (this species only) |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12937 all species → | F-box-like | F-box-like | Domain | Interproscan |
| PF00400 all species → | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR001810 all species → | Domain | F-box domain | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR052301 all species → | Family | SCF Complex F-box/Wd Repeat-Containing Protein | Interproscan |
| IPR036047 all species → | Homologous_superfamily | F-box-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14381 all species → | DACTYLIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0019005 all species → | Cellular Component | SCF ubiquitin ligase complex | Interproscan |
| GO:0031146 all species → | Biological Process | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10262 | FBXW4, SHFM3; F-box and WD-40 domain protein 4 | - | Ubiquitin system | ko04121 | deepkoala |
Transcript abundance of CAB3999277.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 9.94 | 27.72 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 8.73 | 21.23 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.69 | 3.45 | |
| apical branchlet · Control at T0 | 4 | 1 | 1.36 | 5.45 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
