Genomic Location: not available for this species
NR annotation: CAB3999379.1, vacuolar sorting-associated 16 homolog, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3999379.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9H269 | Vacuolar protein sorting-associated protein 16 homolog OS=Homo sapiens OX=9606 GN=VPS16 PE=1 SV=2 |
| Q5E9L7 | Vacuolar protein sorting-associated protein 16 homolog OS=Bos taurus OX=9913 GN=VPS16 PE=2 SV=1 |
| Q920Q4 | Vacuolar protein sorting-associated protein 16 homolog OS=Mus musculus OX=10090 GN=Vps16 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001418 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04841 all species → | Vps16_N | Vps16, N-terminal region | Repeat | Interproscan |
| PF04840 all species → | Vps16_C | Vps16, C-terminal region | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR038132 all species → | Homologous_superfamily | Vps16, C-terminal domain superfamily | Interproscan |
| IPR016534 all species → | Family | Vacuolar protein sorting-associated protein 16 | Interproscan |
| IPR006926 all species → | Domain | Vps16, N-terminal | Interproscan |
| IPR006925 all species → | Domain | Vps16, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12811 all species → | VACUOLAR PROTEIN SORTING VPS16 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003779 all species → | Molecular Function | actin binding | Interproscan |
| GO:0005765 all species → | Cellular Component | lysosomal membrane | Interproscan |
| GO:0005768 all species → | Cellular Component | endosome | Interproscan |
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0007033 all species → | Biological Process | vacuole organization | Interproscan |
| GO:0016197 all species → | Biological Process | endosomal transport | Interproscan |
| GO:0030897 all species → | Cellular Component | HOPS complex | Interproscan |
| GO:0042144 all species → | Biological Process | vacuole fusion, non-autophagic | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
CAB3999379.1.Transcript abundance of CAB3999379.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
