Genomic Location: not available for this species
NR annotation: CAB3999571.1, ubiquitin carboxyl-terminal hydrolase 35 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3999571.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9P2H5 | Ubiquitin carboxyl-terminal hydrolase 35 OS=Homo sapiens OX=9606 GN=USP35 PE=1 SV=3 |
| Q8NB14 | Ubiquitin carboxyl-terminal hydrolase 38 OS=Homo sapiens OX=9606 GN=USP38 PE=1 SV=2 |
| Q8BW70 | Ubiquitin carboxyl-terminal hydrolase 38 OS=Mus musculus OX=10090 GN=Usp38 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007708 (this species only) |
| Ubiquitin family | DUB|USP|USP · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00443 all species → | UCH | Ubiquitin carboxyl-terminal hydrolase | Family | Interproscan |
| PF21246 all species → | Usp38-like_N | Ubiquitin carboxyl-terminal hydrolase 38-like, N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR018200 all species → | Conserved_site | Ubiquitin specific protease, conserved site | Interproscan |
| IPR001394 all species → | Domain | Peptidase C19, ubiquitin carboxyl-terminal hydrolase | Interproscan |
| IPR049407 all species → | Domain | Ubiquitin carboxyl-terminal hydrolase 38-like, N-terminal domain | Interproscan |
| IPR050164 all species → | Family | Ubiquitin carboxyl-terminal hydrolases | Interproscan |
| IPR028889 all species → | Domain | Ubiquitin specific protease domain | Interproscan |
| IPR038765 all species → | Homologous_superfamily | Papain-like cysteine peptidase superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24006 all species → | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004843 all species → | Molecular Function | cysteine-type deubiquitinase activity | Interproscan |
| GO:0016579 all species → | Biological Process | protein deubiquitination | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11854 | USP35_38; ubiquitin carboxyl-terminal hydrolase 35/38 | EC:3.4.19.12 | Ubiquitin system | ko04121 | deepkoala |
Transcript abundance of CAB3999571.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 12.05 | 25.73 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 5.49 | 18.11 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 1.67 | 8.35 | |
| apical branchlet · Control at T0 | 4 | 3 | 7.74 | 14.64 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
